View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_49 (Length: 275)
Name: NF3992_high_49
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 1371209 - 1371405
Alignment:
| Q |
64 |
ctcacacttccaatggcttgaaaaagtgaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaat |
163 |
Q |
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| T |
1371209 |
ctcacacttccaatggcttgaaaaagtgaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaat |
1371308 |
T |
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| Q |
164 |
gtgtgccaggaccaatgttagagactccatgaagtgcttcagaccaccattcatactttggtatcccaagtctactcacttcaacagcagagtttcc |
260 |
Q |
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| T |
1371309 |
gtgtgccaggaccaatgttagagactccatgaagtgcttcagaccaccattcatactttggtatcccaagtctactcacttcaacagcagagtttcc |
1371405 |
T |
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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 37610043 - 37609880
Alignment:
| Q |
91 |
gaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaatgtgtgccaggaccaatgttagagactc |
190 |
Q |
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| T |
37610043 |
gaagcattgaaagaagctgcaatgagaataggcataggaaaactggttgacccaggtataacattggaaaaatgagttcctggaccaatgttagagactc |
37609944 |
T |
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| Q |
191 |
catgaagtgcttcagaccaccattcatactttggtatcccaagtctactcacttcaacagcaga |
254 |
Q |
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| T |
37609943 |
catgaagtgcttcagaccaccattcatattttggaatcccaagtctgcttacatcaacagcaga |
37609880 |
T |
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