View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_50 (Length: 265)
Name: NF3992_high_50
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_50 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 12269131 - 12268867
Alignment:
| Q |
1 |
aagtatgaataccattattcaattaatacattcctcataacatttttcgtagcaaaaataataattcacgaggtttgtgactgattctagtgacttaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12269131 |
aagtatgaataccattattcaattaatacaatcctcataacatttttcgtagcaaaaataataattctcgaggtttgtgactgattctagtgacttaaaa |
12269032 |
T |
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| Q |
101 |
catgatggtatatatttgtgatatttcaatggattcaaacacctagcacgacacgtaatatgcggnnnnnnnnnnccatttggctcaattacttgtgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12269031 |
catgatggtatatatttgtgatatttcaatggattcaaacacctagcacgacacgtaatatgcggaaaaaaaaaaccatttggctcaattacttgtgatt |
12268932 |
T |
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| Q |
201 |
gaagtaaatcacgagcatgagttacgactagcataatctttaacatcatcacaacgcattgtttt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12268931 |
gaagtaaatcacgagcatgagttacgactagcataatcattaacatcatcacaacgcattgtttt |
12268867 |
T |
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