View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_high_55 (Length: 250)
Name: NF3992_high_55
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_55 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 45318972 - 45319211
Alignment:
| Q |
11 |
cacagaaaaggagggaaaggaaaaccaatgtttcaggagaaattgtaatttcgttggaagggacaaagaaatcaagaagaagttcaaatgcttctcctct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318972 |
cacagaaaaggagggaaaggaaaaccaatgtttcaggagaaattgtaatttcgttggaagggacaaagaaatcaagaagaagttcaaatgcttctcctct |
45319071 |
T |
|
| Q |
111 |
agcttcaaaacatgcagatcccaactatattgttgacatcaaggaagtaacaaatgaaaaaacaccctttgaagaaacaaatgtgtccatggaacacagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45319072 |
agcttcaaaacatgcagatcccaactatattgttgacatcaaggaagtaacaaatgaaaaaacaccctttgaagaaacaaatgtgtccatggaacacagt |
45319171 |
T |
|
| Q |
211 |
aacagtgacatagtccaagcaagttctaaaccatattctc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45319172 |
aacagtgacatagtccaagcaagttctaaaccatattctc |
45319211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University