View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_6 (Length: 552)
Name: NF3992_high_6
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 291 - 537
Target Start/End: Complemental strand, 7381308 - 7381062
Alignment:
| Q |
291 |
gcacgatgaagtgattcttcatcagaacatctcacaactttatgtccttcttcagaattcataaaacaccctttggcaatcaaacttggtgtccaaagca |
390 |
Q |
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| T |
7381308 |
gcacgatgaagtgattcttcatcagaacatctcacaactttatgtccttcttcagaattcataaaacaccctttggcaattaaacttggtgtccaaagca |
7381209 |
T |
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| Q |
391 |
tgtaccccataaccataagccacaagccttgaaaaaatatacttaatgatctcacaaaactaaccaagaagcttttttgcatgggaattcccaaaagggt |
490 |
Q |
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| T |
7381208 |
tgtaccccataaccataagccacaagccttgaaaaaatatacttaatgatcttacaaaactaaccaagaagcttttttgcatgggaattcccaaaagggt |
7381109 |
T |
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| Q |
491 |
agttgaaagagagacaaagacaagaacttgtaagagaagatggtatt |
537 |
Q |
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| T |
7381108 |
agttgaaagagagacaaagacaagaacttgtaagagaagatggtatt |
7381062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7381598 - 7381388
Alignment:
| Q |
1 |
gtactttcttaatttgtcataacccttcctacctttctatgtcaacaggtgaaagagttttttgcccaacatgaataaggcttttgggtttgccaactaa |
100 |
Q |
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| T |
7381598 |
gtactttcttaatttgtcataacccttcctacctttctatgtcaacagatgaaagagttttttgcccaacatgaataaagcttttgggtttgccaactaa |
7381499 |
T |
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| Q |
101 |
gcttctcttttgagactccacatcatcacttaacttttcaacatcttctctctcttcatcctcaatccccaacgagaaataccgaactttatttgcacca |
200 |
Q |
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| T |
7381498 |
gtttctcttttgagactccacatcatcacttaacttttcaacatcttctctctcttcatcctcaatccccaacgagaaataccgaactttatttgcacca |
7381399 |
T |
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| Q |
201 |
taatatttggt |
211 |
Q |
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| T |
7381398 |
taatatttggt |
7381388 |
T |
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