View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_65 (Length: 237)
Name: NF3992_high_65
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45319439 - 45319660
Alignment:
| Q |
1 |
aaacagaaaataacatcttccagtggaggcaagggtaaatcattatcatcaacttctttcttgtcttcaaaaaacaacatcaagaatccttcaagcttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45319439 |
aaacagaaaataacatcttccagtggaggcaagggtaaatcattatcatcaatttctttcttgtcttcaaaaaacaacatcaagagtccttcaagcttaa |
45319538 |
T |
|
| Q |
101 |
gtgataatgccaaaaaattgaaaagagtgtcttctccgaaaaatcatgagaatgctgaagtcaaacctaaactggccagcaatgacaatttaccagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45319539 |
gtgataatgccaaaaaattgaaaagagtgtcttctccgaaaaatcatgagaatgctgaagtcaaacctaaactggccagcaatgacaatttaccagagaa |
45319638 |
T |
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| Q |
201 |
aattttgcatgtcattgattct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45319639 |
aattttgcatgtcattgattct |
45319660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45319313 - 45319369
Alignment:
| Q |
1 |
aaacagaaaataacatcttccagtggaggcaagggtaaatcattatcatcaacttct |
57 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
45319313 |
aaacagaaaataacatcttccagtggaggtaaggataaatcattatcatcaagttct |
45319369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45319376 - 45319432
Alignment:
| Q |
1 |
aaacagaaaataacatcttccagtggaggcaagggtaaatcattatcatcaacttct |
57 |
Q |
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||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||| |
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| T |
45319376 |
aaacagaaaataacatcttgcaatggaggcaaggataaatcattatcatcaagttct |
45319432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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