View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_67 (Length: 224)
Name: NF3992_high_67
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 7037661 - 7037466
Alignment:
| Q |
19 |
gaattcctgaccttgtgaactacaggattatatgcactgtgtgggacgggctgctcctgctggagttgccatttcctttgtgagcccaaatgaggcgaga |
118 |
Q |
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| T |
7037661 |
gaattcctgaccttgtgaactacaggattatatgcaccatgtgggacaggctgctcctactggagttgccatttcctttgtgagcccaaatgaggcgaga |
7037562 |
T |
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| Q |
119 |
tggtttgaaatgatagagacacatataggtgaggagttgcgttgctgttttaaagaacaataatttcttagtaaataattgatacaagtattatct |
214 |
Q |
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| T |
7037561 |
tggtttgaaatgatagagacacatataggtgaggagttgctttgctgttttaaagaacaataatttcttagtaaataattgatacaagtattatct |
7037466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 7876753 - 7876605
Alignment:
| Q |
19 |
gaattcctgaccttgtgaactacaggattatatgcactgtgtgggacgggctgctcctgctggagttgccatttcctttgtgagcccaaatgaggcgaga |
118 |
Q |
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| T |
7876753 |
gaattcctgaccttgtgtactacaggattatatgcaccgtgtgggacgggct---cctgctggagttgccatttcctttgtgaacccaaatgaggcgaga |
7876657 |
T |
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| Q |
119 |
tggtttgaaatgatagagacacatataggtgaggagttgcgttgctgtttta |
170 |
Q |
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| T |
7876656 |
tggtttgaaatgatagagacacgtataagtgaggagttgctttgctgtttta |
7876605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 1381418 - 1381374
Alignment:
| Q |
166 |
ttttaaagaacaataatttcttagtaaataattgatacaagtatt |
210 |
Q |
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| T |
1381418 |
ttttaaagaacaaaaacgtcatagtaaataattgatacaagtatt |
1381374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 29378064 - 29377931
Alignment:
| Q |
22 |
ttcctgaccttgtgaactacaggattatatgcactgtgtgggacgggctgctcctgctggagttgccatttcctttgtgagcccaaatgaggcgagatgg |
121 |
Q |
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| T |
29378064 |
ttcctgaccttgtgatctacaggattatatgcatcgtgtgggatggactggtcatgttaatgctgccatttcttttgtgaacccatatgaagcgggacaa |
29377965 |
T |
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| Q |
122 |
tttgaaatgatagagacacatataggtgaggagt |
155 |
Q |
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| T |
29377964 |
cttgaaatgatagagagacatacaggtgaggagt |
29377931 |
T |
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