View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_high_8 (Length: 494)

Name: NF3992_high_8
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_high_8
NF3992_high_8
[»] chr6 (21 HSPs)
chr6 (26-232)||(26059545-26059744)
chr6 (26-232)||(26079515-26079714)
chr6 (18-224)||(26146498-26146698)
chr6 (18-232)||(25486900-25487095)
chr6 (113-224)||(25514427-25514538)
chr6 (99-224)||(25986741-25986855)
chr6 (85-207)||(25077802-25077925)
chr6 (67-175)||(27661928-27662036)
chr6 (79-180)||(27079030-27079131)
chr6 (76-150)||(27423901-27423975)
chr6 (298-364)||(27661450-27661516)
chr6 (110-174)||(27715028-27715092)
chr6 (181-230)||(27661858-27661907)
chr6 (184-232)||(27703195-27703243)
chr6 (442-475)||(26060079-26060112)
chr6 (442-475)||(26080049-26080082)
chr6 (134-183)||(26852408-26852457)
chr6 (184-232)||(26852473-26852521)
chr6 (76-118)||(27703284-27703326)
chr6 (181-222)||(27079147-27079188)
chr6 (118-174)||(31288184-31288240)
[»] scaffold0003 (1 HSPs)
scaffold0003 (76-150)||(63388-63462)
[»] scaffold0349 (1 HSPs)
scaffold0349 (110-174)||(16852-16916)
[»] chr8 (1 HSPs)
chr8 (79-137)||(29270329-29270387)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 26059545 - 26059744
Alignment:
Q  26 ggatgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 125  Q
    ||||||||||||||||||||||||    | ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059545 ggatgagattgaaatattaagcagt---gcacaagatgaaagaaagat----gtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 26059637  T
Q  126 ttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatttctgtatatagtcagttacaaattcaa 225  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26059638 ttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagtcagttacaaattcaa 26059737  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 26079515 - 26079714
Alignment:
Q  26 ggatgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 125  Q
    ||||||||||||||||||||||||    | ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079515 ggatgagattgaaatattaagcagt---gcacaagatgaaagaaagat----gtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 26079607  T
Q  126 ttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatttctgtatatagtcagttacaaattcaa 225  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26079608 ttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagtcagttacaaattcaa 26079707  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 26146498 - 26146698
Alignment:
Q  18 gaggaggagg-atgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagtta 116  Q
    |||||||||| ||||||||||||||||||||||    |  |||||||||||||||||    || ||||||||||||  || |||||||||||||||||||    
T  26146498 gaggaggagggatgagattgaaatattaagcagt---gcgcaagatgaaagaaagat----gttgggtacattccttagtctaggtccatcataaagtta 26146590  T
Q  117 accgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatttctgtatatagtcagtta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  26146591 accgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagtta 26146690  T
Q  217 caaattca 224  Q
    ||||||||    
T  26146691 caaattca 26146698  T

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Target: chr6; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 25486900 - 25487095
Alignment:
Q  18 gaggaggagg-atgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagtta 116  Q
    |||||||||| ||||||||||||||||||||||    |  |||||||||||||||||    || ||||||||||||  || |||||||||||||||||||    
T  25486900 gaggaggagggatgagattgaaatattaagcagt---gcgcaagatgaaagaaagat----gttgggtacattccttagtctaggtccatcataaagtta 25486992  T
Q  117 accgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatttctgtatatagtcagtta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||           ||||||||||||  ||||||||||||||||||||||    
T  25486993 accgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttg-----------tataaatgttga--aatttctgtatatagtcagtta 25487079  T

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Target: chr6; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 25514427 - 25514538
Alignment:
Q  113 gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatttctgtatatagtca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  25514427 gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtca 25514526  T
Q  213 gttacaaattca 224  Q
    ||||||||||||    
T  25514527 gttacaaattca 25514538  T

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Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 25986741 - 25986855
Alignment:
Q  99 aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatataaatgttgattaatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           ||||||||||||||||||    
T  25986741 aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttg-----------tataaatgttgattaatt 25986829  T
Q  199 tctgtatatagtcagttacaaattca 224  Q
    ||||||||||||| ||||||||||||    
T  25986830 tctgtatatagtccgttacaaattca 25986855  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 25077802 - 25077925
Alignment:
Q  85 acattcctcggttta-ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatat 183  Q
    |||||||| |||||| ||| |||| |||||||||||||||| ||||| || ||| |||| |||||||||||||||||  |||||||||||||||||||||    
T  25077802 acattccttggtttaaggtgcatcgtaaagttaaccgtcttgttgttgtt-tcttaatcacaacattgcaggtttgtgttttgttgtttacactttatat 25077900  T
Q  184 aaatg-ttgattaatttctgtatat 207  Q
    ||| | |||||||||||||||||||    
T  25077901 aaacgtttgattaatttctgtatat 25077925  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 27662036 - 27661928
Alignment:
Q  67 gaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttg 166  Q
    |||||| ||||||||||||||||||| | |  |||| |  |||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||     
T  27662036 gaaagaaatatgtggggtacattccttgatccaggtgcgccataaagttaaccgtcttgttgttatcctctcaatctcaactttgcaggtttgtgcttta 27661937  T
Q  167 ttgtttaca 175  Q
     ||||||||    
T  27661936 ctgtttaca 27661928  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 27079030 - 27079131
Alignment:
Q  79 tggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttacactt 178  Q
    ||||||||||||||  || ||||| ||| || | |||| || |||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  27079030 tggggtacattcctttgtctaggtgcattatgaggttagccatcttgttgttattctctcaatctcaacattgaaggtttgtgctttgctgtttacactt 27079129  T
Q  179 ta 180  Q
    ||    
T  27079130 ta 27079131  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 27423975 - 27423901
Alignment:
Q  76 atgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt 150  Q
    |||| |||||||||||| ||| ||||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  27423975 atgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt 27423901  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 27661516 - 27661450
Alignment:
Q  298 ttgaagtcttcataagttattgtaaagattcagtgtttttaaatattgctctacattcagttgatga 364  Q
    ||||||||||||| ||||||| |||||||||||  ||||| |||||||||||||||| |||||||||    
T  27661516 ttgaagtcttcatgagttattataaagattcagactttttgaatattgctctacatttagttgatga 27661450  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 27715092 - 27715028
Alignment:
Q  110 aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttac 174  Q
    |||||||| |||||||||||||||||||||||||||| | | ||||||||| ||||| |||||||    
T  27715092 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgctgtttac 27715028  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 27661907 - 27661858
Alignment:
Q  181 tataaatgttgattaatttctgtatatagtcagttacaaattcaatgttt 230  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  27661907 tataaatattgattaatttctgtatatagtcaattacaaattcattgttt 27661858  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 27703243 - 27703195
Alignment:
Q  184 aaatgttgattaatttctgtatatagtcagttacaaattcaatgtttct 232  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  27703243 aaatgttgattaatttctgtatatagtcaattacaaattcgttgtttct 27703195  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 475
Target Start/End: Original strand, 26060079 - 26060112
Alignment:
Q  442 acctataaatgtatggataatttaagtagtacat 475  Q
    ||||||||||||||||||||||||||||||||||    
T  26060079 acctataaatgtatggataatttaagtagtacat 26060112  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 475
Target Start/End: Original strand, 26080049 - 26080082
Alignment:
Q  442 acctataaatgtatggataatttaagtagtacat 475  Q
    ||||||||||||||||||||||||||||||||||    
T  26080049 acctataaatgtatggataatttaagtagtacat 26080082  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 26852408 - 26852457
Alignment:
Q  134 ctctcaatctcaacattgcaggtttgtcctttgttgtttacactttatat 183  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||||||||    
T  26852408 ctctcaatctcaacattggaggtttgtggtttgctgtttacactttatat 26852457  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 26852473 - 26852521
Alignment:
Q  184 aaatgttgattaatttctgtatatagtcagttacaaattcaatgtttct 232  Q
    ||||||||||||||||||||||||||||| || |||||||  |||||||    
T  26852473 aaatgttgattaatttctgtatatagtcaattgcaaattcgttgtttct 26852521  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 27703326 - 27703284
Alignment:
Q  76 atgtggggtacattcctcggtttaggtccatcataaagttaac 118  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  27703326 atgtggggtacattccttggtctagctccatcataaagttaac 27703284  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 27079147 - 27079188
Alignment:
Q  181 tataaatgttgattaatttctgtatatagtcagttacaaatt 222  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  27079147 tataaacgttgattaatttctgtatatattcaattacaaatt 27079188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 31288184 - 31288240
Alignment:
Q  118 ccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttac 174  Q
    ||||||| ||||||||||||  |||||||| ||||||||||||  |||| |||||||    
T  31288184 ccgtcttgttgttattctcttgatctcaactttgcaggtttgtggtttgctgtttac 31288240  T

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Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 63388 - 63462
Alignment:
Q  76 atgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt 150  Q
    |||| |||||||||||| ||| ||||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  63388 atgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt 63462  T

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Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 16852 - 16916
Alignment:
Q  110 aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgttgtttac 174  Q
    |||||||| |||||||||||||||||||||||||||| | | ||||||||| ||||| |||||||    
T  16852 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgctgtttac 16916  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 29270387 - 29270329
Alignment:
Q  79 tggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctct 137  Q
    |||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||||    
T  29270387 tggggtacataccttagtctaggtccattataaagttaaccgtcttcttgttattctct 29270329  T

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