View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_12 (Length: 456)
Name: NF3992_low_12
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 38659620 - 38660053
Alignment:
| Q |
15 |
atatttgtcggttcccacttctaaacccattataaaatttggtaatattcatataaaaacttaccacattctccactatacaacttgttattatatatag |
114 |
Q |
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| T |
38659620 |
atatttgtcggttcccacttctaaacccattataaaatttggtaatattcatataaaaacttaccacattctccactatacaacttgttattatatatag |
38659719 |
T |
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| Q |
115 |
taacacaacctttcttattctgcatgtattccattccatccagttccattaccttataactcaattgcaacttgtgtgttctatagtctactagtgctcc |
214 |
Q |
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| T |
38659720 |
taacacaacctttcttattctgcatgtatttcattccatccagttccattaccttataactcaattgcaacttgtgtgttctatagtgtactagtgctcc |
38659819 |
T |
|
| Q |
215 |
tagtcacttgaacatagaaagtagaatctcctttggtttttctttcaacttcctcaaactaaaggttactatttgtgactttattcctttcatctagttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38659820 |
tagtcacttgaacatagaaagtagaatctcctttggtttttctttcaacttcctcaaactaaaggttactatttgtgactttattcctttcatctagttg |
38659919 |
T |
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| Q |
315 |
tttttacacttgacactcactaagccaattaatttgtatctc--atttttcctaatttttagtagaaactatatttaaaatgaagcactctcctatttta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38659920 |
tttttacacttgacactcactaagccaattaatttgtatctcatatttttcctaatttttagtagaaactatatttaaaatgaagcactctcctatttta |
38660019 |
T |
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| Q |
413 |
acactattattctctttatattttcttacttcat |
446 |
Q |
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| T |
38660020 |
acactattattctctttatattttcttacttcat |
38660053 |
T |
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