View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_18 (Length: 439)

Name: NF3992_low_18
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_low_18
NF3992_low_18
[»] chr1 (8 HSPs)
chr1 (20-410)||(33856879-33857273)
chr1 (20-410)||(33923650-33924044)
chr1 (192-428)||(47872396-47872640)
chr1 (21-83)||(45191206-45191268)
chr1 (29-72)||(49547593-49547636)
chr1 (272-302)||(44261733-44261763)
chr1 (108-144)||(47872307-47872343)
chr1 (75-159)||(49444127-49444211)
[»] chr4 (2 HSPs)
chr4 (32-90)||(55768162-55768220)
chr4 (32-90)||(55832418-55832476)
[»] chr3 (7 HSPs)
chr3 (21-84)||(14961252-14961314)
chr3 (21-84)||(14961483-14961546)
chr3 (108-149)||(14961558-14961599)
chr3 (21-50)||(532626-532655)
chr3 (21-50)||(565209-565238)
chr3 (21-98)||(574896-574973)
chr3 (21-57)||(542974-543010)
[»] chr5 (1 HSPs)
chr5 (278-330)||(31264611-31264663)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 33856879 - 33857273
Alignment:
Q  20 cagggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttgagatgaatgattagtagtttat 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33856879 cagggcatacatatttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacacttccatttcaacttgagatgaatgattagtagtttat 33856978  T
Q  120 gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctata--tatatgccatggttctaccatatgccgcaatgccatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  33856979 gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga 33857078  T
Q  218 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857079 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 33857178  T
Q  318 atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgtt---gaagaaaaactaattgatgatagaattttt 410  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  33857179 atttagagactaatttgatta-aaaactaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttt 33857273  T

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Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 33924044 - 33923650
Alignment:
Q  20 cagggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttgagatgaatgattagtagtttat 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33924044 cagggcatacatatttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacacttccatttcaacttgagatgaatgattagtagtttat 33923945  T
Q  120 gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctatatatat--gccatggttctaccatatgccgcaatgccatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  33923944 gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga 33923845  T
Q  218 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923844 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 33923745  T
Q  318 atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgtt---gaagaaaaactaattgatgatagaattttt 410  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  33923744 atttagagactaatttgatta-aaaactaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttt 33923650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 428
Target Start/End: Original strand, 47872396 - 47872640
Alignment:
Q  192 ttctaccatatgccgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtat------gacatttaaattgttta 285  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||| |||| ||| |||       | |||||| ||||| |    
T  47872396 ttctaccatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagttctctagttatatatataagtggcatatttaatttgttca 47872495  T
Q  286 atctttgttggattgagacagacggagtcctaatttagagactaatttgattaggtt----actaattgatggattaagttgtgacacactgcattgttg 381  Q
    |||||||||||||| ||    | |||||||||||||||||||||||||||| |  ||    || | |||||||||||||||||||||| |||||||||||    
T  47872496 atctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaatttgatggattaagttgtgacactctgcattgttg 47872595  T
Q  382 aagaaaaactaattgatgatagaatttttccacgtaatgaactgatg 428  Q
    |||||  ||  || |||||||||| |||  || ||||||||||||||    
T  47872596 aagaactac--atcgatgatagaaatttgtcatgtaatgaactgatg 47872640  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 45191206 - 45191268
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacact 83  Q
    ||||||| || ||||||||||||| |||||| ||||||||| |||||||||| ||||||||||    
T  45191206 agggcatgcaaatttaattttggggttcaatgccttcctgccaaaggaacatcaaatcacact 45191268  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 49547636 - 49547593
Alignment:
Q  29 cagatttaattttgggattcaataccttcctgcgaaaggaacat 72  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||    
T  49547636 cagatttaattttgggattcaacaccttactgccaaaggaacat 49547593  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 44261763 - 44261733
Alignment:
Q  272 atttaaattgtttaatctttgttggattgag 302  Q
    |||||||||||||||||||||||||||||||    
T  44261763 atttaaattgtttaatctttgttggattgag 44261733  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 47872307 - 47872343
Alignment:
Q  108 ttagtagtttatgattattaattgcacttcacatatg 144  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  47872307 ttagtagtttatgattattcattgcacttctcatatg 47872343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 49444211 - 49444127
Alignment:
Q  75 aatcacacttccatttcaacttgagatgaatgattagtagtttatgattattaattgcacttcacatatgtttatgattttctgc 159  Q
    ||||||||||||||||||| ||||||  | || |||||||||||| | |||| |||| | ||| ||||| || ||| ||||||||    
T  49444211 aatcacacttccatttcaatttgagaccactggttagtagtttatcactattcattgtaattctcatatcttgatgcttttctgc 49444127  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 55768162 - 55768220
Alignment:
Q  32 atttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccattt 90  Q
    |||||||||||||||||||| ||||||||| | ||||||||  ||||||||||||||||    
T  55768162 atttaattttgggattcaatgccttcctgccagaggaacatcgaatcacacttccattt 55768220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 55832418 - 55832476
Alignment:
Q  32 atttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccattt 90  Q
    |||||||||||||||||||| ||||||||| | ||||||||  ||||||||||||||||    
T  55832418 atttaattttgggattcaatgccttcctgccagaggaacatcgaatcacacttccattt 55832476  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 14961252 - 14961314
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacactt 84  Q
    |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| |||||||||||    
T  14961252 agggcatacaaacttaattt-gggattcaacaccttcctgccaaaggaacatcaaatcacactt 14961314  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 14961483 - 14961546
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacactt 84  Q
    ||||||||||||| |||||||||||||||| | |||||||| ||||||| ||| || |||||||    
T  14961483 agggcatacagatctaattttgggattcaacatcttcctgcaaaaggaatattgaaccacactt 14961546  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 14961558 - 14961599
Alignment:
Q  108 ttagtagtttatgattattaattgcacttcacatatgtttat 149  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  14961558 ttagtagtttatgattattcattgcatttcacatatgtttat 14961599  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 532655 - 532626
Alignment:
Q  21 agggcatacagatttaattttgggattcaa 50  Q
    ||||||||||||||||||||||||||||||    
T  532655 agggcatacagatttaattttgggattcaa 532626  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 565238 - 565209
Alignment:
Q  21 agggcatacagatttaattttgggattcaa 50  Q
    ||||||||||||||||||||||||||||||    
T  565238 agggcatacagatttaattttgggattcaa 565209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 574973 - 574896
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttga 98  Q
    ||||||||| ||||||||||||||||||||  ||||| ||| |||| || ||  |||||||| |||| |||| |||||    
T  574973 agggcatacggatttaattttgggattcaacgccttcttgccaaagaaatatcgaatcacacctccagttcagcttga 574896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 543010 - 542974
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttc 57  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  543010 agggcataccgatttaattttgggattcaatgccttc 542974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 31264611 - 31264663
Alignment:
Q  278 attgtttaatctttgttggattgagacagacggagtcctaatttagagactaa 330  Q
    |||||| ||||||||||||| ||||||| | |||||||||||||  |||||||    
T  31264611 attgttcaatctttgttggaatgagacaaatggagtcctaattttaagactaa 31264663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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