View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_low_19 (Length: 433)
Name: NF3992_low_19
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 37245488 - 37245907
Alignment:
| Q |
1 |
atttccctggtatcgtgagtctttcgtgaattggctcacacttttgttttctcttgcgtttttctgcaacttttggtggaatctccttgattcactctac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245488 |
atttccatggtatcgtgagtctttcgtgaattggctcacacttttgttttctcttgcgttttactgcaacttttggtggaatctccttgattcactctac |
37245587 |
T |
|
| Q |
101 |
aatttccttctttttctgcaattgcacgtaatttgtgtttcttgcttttttcaacgatcttcgtcatctaccttgaagctttctttgaatttccatggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245588 |
aatttccttctttttctgcaattgcacgtaatttgtgtttcttgcttttttcaacgatcttcgtcatctaccttgaagctttctttgaatttccatggca |
37245687 |
T |
|
| Q |
201 |
cgcaatactacttctacgggtgccaacaacggcactactttgacagacccttcacagagtactacctcatagtaatatgtttattctagtgatggaccta |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37245688 |
cgcaatactacttctacgagtgccaacaacagcactactttgacagacccttcacagagtactacctcatagtactatgtttattctagtgatggaccta |
37245787 |
T |
|
| Q |
301 |
attctgttacggttacacctctcttggatggaagcaacaaccttgcttgggctcaagcaatgcgttgtgctttaggttctaagaacaagtttaagttcgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245788 |
attctgttacggttacacctctcttggatggaagcaacaaccttgcttgggctcaagcaatgcgttgtgctttaggttctaagaacaagtttaagttcgt |
37245887 |
T |
|
| Q |
401 |
tgatggaagcattatagttc |
420 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37245888 |
tgatggaagcattatagttc |
37245907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 413
Target Start/End: Original strand, 4261067 - 4261189
Alignment:
| Q |
291 |
gatggacctaattctgttacggttacacctctcttggatggaagcaacaaccttgcttgggctcaagcaatgcgttgtgctttaggttctaagaacaagt |
390 |
Q |
| |
|
||||||||||||| |||| ||||||||| || |||||||||| ||| ||||||||||||| ||| || ||| |||||||||| |||||||||||| |
|
|
| T |
4261067 |
gatggacctaattatgtttcggttacactgcttttggatggaaaaaactttcttgcttgggctcgagcgattcgtcatgctttaggtgctaagaacaagt |
4261166 |
T |
|
| Q |
391 |
ttaagttcgttgatggaagcatt |
413 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
4261167 |
ttcagttcgttgatggaagcatt |
4261189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 409
Target Start/End: Original strand, 1194441 - 1194578
Alignment:
| Q |
271 |
agtaatatgtttattctagtgatggacctaattctgttacggttacacctctcttggatggaagcaacaaccttgcttgggctcaagcaatgcgttgtgc |
370 |
Q |
| |
|
|||| |||||| || |||||||||||||||||| ||||| ||||||||| | || ||| ||||||| | ||| |||||||| ||| || ||| |||| |
|
|
| T |
1194441 |
agtactatgttcatcctagtgatggacctaattttgtta-ggttacaccaattttagataaaagcaactatctttcttgggcttgagccattcgtcgtgc |
1194539 |
T |
|
| Q |
371 |
tttaggttctaagaacaagtttaagttcgttgatggaag |
409 |
Q |
| |
|
|||||| |||||||||||||| | || ||||||||||| |
|
|
| T |
1194540 |
tttaggggctaagaacaagtttcaatttgttgatggaag |
1194578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 422
Target Start/End: Original strand, 27664401 - 27664499
Alignment:
| Q |
324 |
ttggatggaagcaacaaccttgcttgggctcaagcaatgcgttgtgctttaggttctaagaacaagtttaagttcgttgatggaagcattatagttcat |
422 |
Q |
| |
|
||||||||||||||| | |||||||||| |||| | ||| || |||| ||| || ||||||||| |||| ||||||||||| |||| ||| ||||||| |
|
|
| T |
27664401 |
ttggatggaagcaactatcttgcttgggatcaaacgatgtgtcgtgcattaagtgctaagaacatgtttcagttcgttgatcgaagtattccagttcat |
27664499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University