View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_2 (Length: 808)
Name: NF3992_low_2
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 748; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 12 - 793
Target Start/End: Complemental strand, 37845155 - 37844373
Alignment:
| Q |
12 |
caaaggagcaggtcctctcacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacgaca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845155 |
caaaggagcaggtcctctcacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacgaca |
37845056 |
T |
|
| Q |
112 |
cacccgaggtgagtgcatacggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaatttatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845055 |
cacccgaggtgagtgcatacggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaatttatc |
37844956 |
T |
|
| Q |
212 |
aaagtagttattatggtggaagcttgagaaggaatttatttcactcttccaaacagtatctgaagtgcttatagcataaaagcttatcatataagtgttt |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37844955 |
aaagtagttattatggtggaagcttgagaaggaatttatttcactctttcaaacagtatcttaagtgcttatagcataaaagcttatcatataagtgttt |
37844856 |
T |
|
| Q |
312 |
atctataagtcattttcataagctctctagaatagctaatgaaaacgactt---atggagacacactaaccagtttgcaattgaacacttacctttaatc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844855 |
atctataagtcattttcataagctctctagaatagctaatgaaaacgacttataatggagacacactaaccagtttgcaattgaacacttacctttaatc |
37844756 |
T |
|
| Q |
409 |
cttgtgtaagagtacggtcaccgggtccatgtgactttagccattctgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtgga |
508 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844755 |
cttgtgtaagagtacggtcaccgggtccatgtgactttagccattctgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtgga |
37844656 |
T |
|
| Q |
509 |
agaacctgagctgtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaac |
608 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844655 |
agaacctgagctgtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaac |
37844556 |
T |
|
| Q |
609 |
atataattagcaatatggtagactactaatagttttcttctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagc |
708 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844555 |
atataattagcaatatggtagactac--atagttttcttctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagc |
37844458 |
T |
|
| Q |
709 |
aaagtaaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttg |
793 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844457 |
aaagtgaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttg |
37844373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 33197401 - 33197360
Alignment:
| Q |
279 |
cttatagcataaaagcttatcatataagtgtttatctataag |
320 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||||| |
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| T |
33197401 |
cttataacataaacgcttatcatataagtgcttatctataag |
33197360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 1431475 - 1431417
Alignment:
| Q |
274 |
aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataa |
332 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| |
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|
| T |
1431475 |
aagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataa |
1431417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 10923638 - 10923604
Alignment:
| Q |
323 |
attttcataagctctctagaatagctaatgaaaac |
357 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
10923638 |
attttcataagctctccagaatagctaatgaaaac |
10923604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 20982302 - 20982256
Alignment:
| Q |
274 |
aagtgcttatagcataaaagcttatcatataagtgtttatctataag |
320 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
20982302 |
aagtgcttatagcataagtgcttatcatataagtgcttatgtataag |
20982256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 24936212 - 24936265
Alignment:
| Q |
272 |
tgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt |
326 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||| ||||||| |||| |
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| T |
24936212 |
tgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttattt |
24936265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 29094288 - 29094330
Alignment:
| Q |
278 |
gcttatagcataaaagcttatcatataagtgtttatctataag |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
29094288 |
gcttatagcataaacacttatcatataagtgtttatgtataag |
29094330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 24263306 - 24263261
Alignment:
| Q |
274 |
aagtgcttatagcataaaagcttatcatataagtgtttatctataa |
319 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||| ||||| |
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|
| T |
24263306 |
aagtgcttatagcataaacgtttagcatataagtgtttatgtataa |
24263261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 25479623 - 25479582
Alignment:
| Q |
323 |
attttcataagctctctagaatagctaatgaaaacgacttat |
364 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||||| |
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|
| T |
25479623 |
attttcataagctctctaggatagcttatgaaaacaacttat |
25479582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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