View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_low_20 (Length: 415)
Name: NF3992_low_20
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 32738717 - 32738350
Alignment:
| Q |
19 |
agaaggaaatgagaaaaagataatgcattcaagtcaaaaactctccatagcaa-tagcatgaattatatcaagtgaccaattcaaaacaaatttgatctt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32738717 |
agaaggaaatgagaaaaagagaatgcattcaagtcaaaaactctccatagcaaatagcatgaattatatcatgtgaccaattcaaaacaaatttgatctt |
32738618 |
T |
|
| Q |
118 |
tttgttttgcttctttcaaatgtaatagtaatataagataaccgttggttaattaataaatgataactagtcaacattaaatcgttaaataaaaataact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32738617 |
tttgttttgcttctttcaaatgtaatagtaatataagataaccgttagttaattaataaatgatcactagtcaacattaaatcgttaaataaaaataact |
32738518 |
T |
|
| Q |
218 |
catgagtcacacagnnnnnnnnnnnnnnnnactcaagaatgttaggtacaccaattaatataaatagcacgatnnnnnnnatgagatgctcaaatatttg |
317 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32738517 |
catgagtta--------------attttttactcaagaatgttaggtacaccaattaatataaatagcacgat-ccccccatgagatgctcaaatatttg |
32738433 |
T |
|
| Q |
318 |
tcttgcttattaaatctccaattctttttcaaagacacaccacaccatgaaggttctcaaagttattttggccttgcttttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32738432 |
tcttgcttattaaatctccaattctttttcaaagacacacaacaccatgaaggttctcaaagttattttggccttgcttttgc |
32738350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 400
Target Start/End: Complemental strand, 32741775 - 32741414
Alignment:
| Q |
41 |
atgcattcaagtcaaaaactctccatagcaatagcatgaattatatcaagtgaccaattcaaaacaaatttgatctttttgttttgcttctttcaaatgt |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || | ||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
32741775 |
atgcattcaagtcaaagactctccatagcagga--atca--tatatcatgtaaccaattcaaaacaaatttgatgtttttgtttttcttctttcacatgt |
32741680 |
T |
|
| Q |
141 |
aatagtaatataagataaccgttggttaattaataaatgataactagtcaacattaaatcgttaaataaaaataactcatgagtcacacagnnnnnnnnn |
240 |
Q |
| |
|
| ||||||||| || || ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
32741679 |
a---gtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaaataaaa-taacacatgagtcacaca-----attta |
32741589 |
T |
|
| Q |
241 |
nnnnnnnactcaagaatgttaggtacaccaattaatataaatagcacgatnnnnnnnatgagatgctcaaatatt-------tg---------tcttgct |
324 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||||| || ||||||| |
|
|
| T |
32741588 |
ttcttttactcaagaatgttaggcaaaccaattaatataaatagcacga-cccccccatgagatgcttaaatattatagtagtgcaatattcatcttgct |
32741490 |
T |
|
| Q |
325 |
tattaaatctccaattctttttcaaagacacaccacaccatgaaggttctcaaagttattttggccttgcttttgc |
400 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32741489 |
tactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattttggccttgcttttgc |
32741414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University