View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_22 (Length: 411)

Name: NF3992_low_22
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_low_22
NF3992_low_22
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-393)||(47332-47708)
[»] scaffold0264 (1 HSPs)
scaffold0264 (17-393)||(16233-16609)
[»] scaffold0007 (1 HSPs)
scaffold0007 (134-393)||(4835-5094)
[»] chr6 (11 HSPs)
chr6 (17-389)||(20086284-20086656)
chr6 (17-180)||(20205604-20205767)
chr6 (17-180)||(22099627-22099790)
chr6 (17-169)||(21972168-21972317)
chr6 (275-392)||(18997338-18997455)
chr6 (219-394)||(24384709-24384890)
chr6 (275-392)||(20238455-20238572)
chr6 (275-392)||(22132439-22132556)
chr6 (17-174)||(22204725-22204879)
chr6 (353-393)||(20128333-20128373)
chr6 (353-393)||(22204497-22204537)


Alignment Details
Target: scaffold0074 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 47708 - 47332
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47708 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatatctccaataagtggacgtgctgcttcat 47609  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatacctatactgtataacccaaggatatgcataaaa 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47608 ctgcagtttcgtacccggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatacctatactgtataacccaaggatatgcataaac 47509  T
Q  217 cttggaaaagaaagactcattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaaggacggtttttgaatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47508 cttggaaaagaaagactcattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaaggacggtttttgaatt 47409  T
Q  317 gcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaacaatccatagacagaatcaga 393  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  47408 gcattaactatgcattcatcacatatttgaaaggagacatcacccctgcacatgaacaatccatagacagaatcaga 47332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 16233 - 16609
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16233 cactgagctagacagtatagggtctgatttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 16332  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatacctatactgtataacccaaggatatgcataaaa 216  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||  |  |||||||  || | |||     
T  16333 ctgcagtttcgtaccaggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatatgtacactgtgcataccaaggacttgtagaaac 16432  T
Q  217 cttggaaaagaaagactcattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaaggacggtttttgaatt 316  Q
      |||||||||||||||||||||||||||||||||||||||| || ||  |||| | ||||| ||||||||||||||||||||||||  |||||||| ||    
T  16433 agtggaaaagaaagactcattggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatctaaggaaagtttttgagtt 16532  T
Q  317 gcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaacaatccatagacagaatcaga 393  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  16533 gcattaactatgcattcatcacagatttgaaaggtgacatcacccctgcacatgaacaatccatagacagaatcaga 16609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 134 - 393
Target Start/End: Complemental strand, 5094 - 4835
Alignment:
Q  134 gttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatacctatactgtataacccaaggatatgcataaaacttggaaaagaaagact 233  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||  || || ||  || || | |||||| || || ||   |||||||||||||||    
T  5094 gttgaagacaataaaggctcgaagcttgtcgtgtttgagacgttggcggacttacacattacaaacgaaggatttgtatcaacagtggaaaagaaagact 4995  T
Q  234 cattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaaggacggtttttgaattgcattaactatgcattc 333  Q
    ||||||||||||||||||||||||| || ||  |||| | ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4994 cattggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatctaaggacagtttttgagttgcattaactatgcattc 4895  T
Q  334 atcacatatttgaaaggacacatcacccctacacatgaacaatccatagacagaatcaga 393  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  4894 atcacagatttgaaaggtgacatcacccctgcacatgaacaatccatagacagaatcaga 4835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 20086284 - 20086656
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    ||||||||||||||||||||||||||   ||  ||||  | |||||||||||| ||||||||||| ||  ||||   | ||||||||| ||||||||| |    
T  20086284 cactgagctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaacttcttgttgttgtcagtagtaagtggacctgctgcttcct 20086383  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggcatacctatactgtataacccaaggatatgcataaaa 216  Q
    |||||||||  | ||  || |||||||||||||||||||||||||  ||||||||||| |||  |   ||  ||   | ||  | | ||| || || ||     
T  20086384 ctgcagttttatccatcgtcgaaaacaataaaggcatgaagctttctgtgtttgagacattgagaatgctcgacataaaaagactatgatgtgtatcaac 20086483  T
Q  217 cttggaaaagaaagactcattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaaggacggtttttgaatt 316  Q
      ||||||||||||||||  |||||||||||||||||||||| || ||  |||| | ||||| ||||||||||||||||||||||||  |||||||| ||    
T  20086484 agtggaaaagaaagactcgctggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatctaaggaaagtttttgagtt 20086583  T
Q  317 gcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaacaatccatagacagaat 389  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  20086584 gcattaactatgcattcatcacagatttgaaaggtgacatcacccctgcacatgaacaatccatagacagaat 20086656  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 20205604 - 20205767
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    |||||||||||||||||||||||||| |||| |||| || |||||||||| |||||||||||||  ||| |||| ||||||||||||| |||||||||||    
T  20205604 cactgagctagacagtaaagggtctgattttccgaatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcat 20205703  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggc 180  Q
    || |||||   | || ||||| ||||||||||| ||  ||||| |||||||||| ||| |||||    
T  20205704 ctacagttcgattcatggttgtaaacaataaagacacaaagctcttcgtgtttgtgacattggc 20205767  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 22099627 - 22099790
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    |||||||||||||||||||||||||| |||| |||| || |||||||||| |||||||||||||  ||| |||| ||||||||||||| |||||||||||    
T  22099627 cactgagctagacagtaaagggtctgattttccgaatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcat 22099726  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgttggc 180  Q
    || |||||   | || ||||| ||||||||||| ||  ||||| |||||||||| ||| |||||    
T  22099727 ctacagttcgattcatggttgtaaacaataaagacacaaagctcttcgtgtttgtgacattggc 22099790  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 21972168 - 21972317
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| || |   |||| ||| |||| |||| ||||||||| |    
T  21972168 cactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaacttgttct---tgtcaccactaagcggacttgctgcttcgt 21972264  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgttt 169  Q
    ||||||||   | || ||||||||||||||||| || ||||||||||||||||    
T  21972265 ctgcagttcgattcatggttgaaaacaataaagacacgaagcttttcgtgttt 21972317  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 18997338 - 18997455
Alignment:
Q  275 gcttctttggataatgggcaatctaaggacggtttttgaattgcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaaca 374  Q
    |||| ||||||||| ||||||||||||||| |||||| | |||||| ||||||||||||| |||| |||||| |||| || |||||||| ||||||||||    
T  18997338 gcttgtttggataaagggcaatctaaggacagttttttagttgcatgaactatgcattcaacacagatttgagaggagacgtcacccctgcacatgaaca 18997437  T
Q  375 atccatagacagaatcag 392  Q
    ||||||||||||||||||    
T  18997438 atccatagacagaatcag 18997455  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 394
Target Start/End: Complemental strand, 24384890 - 24384709
Alignment:
Q  219 tggaaaagaaagactcattggagtatcgaaccatgcaattgtcataccaaataatagcttctttggataatgggcaatctaag------gacggtttttg 312  Q
    ||||||||||| | |  ||||||||| |||||||||| |  ||||||||||| ||||||  |||||| || | ||||||| ||      ||| |||||||    
T  24384890 tggaaaagaaataatagttggagtattgaaccatgcactcctcataccaaatgatagctcgtttggagaaagagcaatctgagtctgaggacagtttttg 24384791  T
Q  313 aattgcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaacaatccatagacagaatcagat 394  Q
    | ||||||||||||||||||||| ||| | |||| || | |  |||||||| ||||||||||||||||||||| ||||||||    
T  24384790 agttgcattaactatgcattcatgacaaagttgagagtaaatgtcacccctgcacatgaacaatccatagacaaaatcagat 24384709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 20238455 - 20238572
Alignment:
Q  275 gcttctttggataatgggcaatctaaggacggtttttgaattgcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaaca 374  Q
    |||| ||| ||||| ||||| |||||||||  ||||||| | |||||||||| |||||||| ||| | |||| || | || |||||||| ||||||||||    
T  20238455 gcttgttttgataaagggcagtctaaggacaatttttgagtagcattaactacgcattcatgacagagttgagagtagacgtcacccctgcacatgaaca 20238554  T
Q  375 atccatagacagaatcag 392  Q
    ||||||||||||||||||    
T  20238555 atccatagacagaatcag 20238572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 22132439 - 22132556
Alignment:
Q  275 gcttctttggataatgggcaatctaaggacggtttttgaattgcattaactatgcattcatcacatatttgaaaggacacatcacccctacacatgaaca 374  Q
    |||| ||| ||||| ||||| |||||||||  ||||||| | |||||||||| |||||||| ||| | |||| || | || |||||||| ||||||||||    
T  22132439 gcttgttttgataaagggcagtctaaggacaatttttgagtagcattaactacgcattcatgacagagttgagagtagacgtcacccctgcacatgaaca 22132538  T
Q  375 atccatagacagaatcag 392  Q
    ||||||||||||||||||    
T  22132539 atccatagacagaatcag 22132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 22204879 - 22204725
Alignment:
Q  17 cactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcat 116  Q
    ||||||||||| ||||||||||||||   ||  ||||    |||||||||||| ||||| ||||| ||   |||  || ||||||||| ||||||||| |    
T  22204879 cactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgtt---gtcagcagtaagtggacctgctgcttcct 22204783  T
Q  117 ctgcagtttcgtacacggttgaaaacaataaaggcatgaagcttttcgtgtttgagac 174  Q
    |||||||||  | ||  || |||||||||||||||||||||||||  |||||||||||    
T  22204782 ctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttctgtgtttgagac 22204725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 20128333 - 20128373
Alignment:
Q  353 acatcacccctacacatgaacaatccatagacagaatcaga 393  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  20128333 acatcacctctgcacatgaacaatccatagacagaatcaga 20128373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 22204537 - 22204497
Alignment:
Q  353 acatcacccctacacatgaacaatccatagacagaatcaga 393  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  22204537 acatcacctctgcacatgaacaatccatagacagaatcaga 22204497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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