View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_26 (Length: 377)

Name: NF3992_low_26
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_low_26
NF3992_low_26
[»] chr2 (4 HSPs)
chr2 (19-357)||(37713516-37713853)
chr2 (75-145)||(2681821-2681891)
chr2 (75-145)||(2704312-2704382)
chr2 (56-145)||(2690524-2690613)
[»] chr4 (3 HSPs)
chr4 (75-145)||(36366670-36366740)
chr4 (56-147)||(36290783-36290874)
chr4 (56-106)||(31708581-31708631)
[»] chr3 (6 HSPs)
chr3 (75-145)||(3103480-3103550)
chr3 (75-145)||(5829875-5829945)
chr3 (57-145)||(5488387-5488475)
chr3 (72-114)||(13855371-13855413)
chr3 (37-145)||(3123011-3123119)
chr3 (57-145)||(5501202-5501290)
[»] scaffold0090 (1 HSPs)
scaffold0090 (71-115)||(8082-8126)
[»] chr8 (2 HSPs)
chr8 (75-142)||(15703512-15703579)
chr8 (75-145)||(15805176-15805246)
[»] chr7 (2 HSPs)
chr7 (56-147)||(20243799-20243890)
chr7 (56-97)||(20231777-20231818)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 37713516 - 37713853
Alignment:
Q  19 gtgatcgaaagaaacccgtgttccttttaccactgagaatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713516 gtgatcgaaagaaacccgtgttctttttaccactgagaatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaa 37713615  T
Q  119 agcatactctggagacatatatccactacnnnnnnnttgttacatgtagcattttagcaagcatgtaaaaacatcttggcctggtaaatatttgaataaa 218  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  37713616 agcatactctggagacatatatccactacaaaaaa-ttgttacatgtagcattttagcaagcatgtaaaaacatcttggcctagtgaatatttgaataaa 37713714  T
Q  219 taaacaaaacttgggaattgtgaattaaacttttaaaataacatttgcataaagaacttactaggttcccattactctttgggtgcttgcttcagtctct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37713715 taaacaaaacttgggaattgtgaattaaacttttaaaataacatttgtataaagaacttactaggttcccattactctttgggtgcttgctccagtctct 37713814  T
Q  319 ttccccccaaatattttggcaagaccaaagtctgatatc 357  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37713815 ttccccccaaatattttggcaagaccaaagtctgatatc 37713853  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 2681821 - 2681891
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||||||||||||||||||||| | ||| |||  ||| |||| |||||| || ||||||||||| |||||    
T  2681821 ccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacatatagccact 2681891  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 2704312 - 2704382
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    |||||||||||||||||||||||   |||||| || || ||||  || || ||||||||||||||||||||    
T  2704312 ccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatatatccact 2704382  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 2690524 - 2690613
Alignment:
Q  56 aatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    |||||||||||| | ||||||||| ||| | |||||||| |||| |||||| || || | || |||||||||  |||||||||| |||||    
T  2690524 aatctctagtagcaatacgccaaaactatatacatctgacttgactgaaaataagccttgcatagcatactcatgagacatataaccact 2690613  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 36366740 - 36366670
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||| || |||||||| ||||| | ||| |||| |||||||| ||||||||||||||||||||| |||||    
T  36366740 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 36366670  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 36290874 - 36290783
Alignment:
Q  56 aatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccactac 147  Q
    |||||||||||| | ||||||||| ||| | ||||| ||||||| |||||| |  || ||||  || || ||||||||||||||||||||||    
T  36290874 aatctctagtagaagtacgccaaaactatatacatcagatttgactgaaaatagaccctccattgcgtattctggagacatatatccactac 36290783  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 31708631 - 31708581
Alignment:
Q  56 aatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaa 106  Q
    |||||||||||| |  || |||||||| |||||||||||||||||||||||    
T  31708631 aatctctagtagtaaaacaccaaagctgaaaacatctgatttgattgaaaa 31708581  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 3103550 - 3103480
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    |||||||| ||||||||||| || | |||||| ||||| |||| |||||| ||||||| ||||||||||||    
T  3103550 ccaaagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccact 3103480  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 5829945 - 5829875
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||||||||||||||| ||||| ||||| || || |||| ||  ||||||||||||| ||||||||||||    
T  5829945 ccaaagctaaaaacatcagattttattgagaaaaacccatgcactgcatactctggaggcatatatccact 5829875  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 5488387 - 5488475
Alignment:
Q  57 atctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||| ||||| || || |||||||| |||||||| ||||| ||||| ||| ||||||||   ||||| ||||||| ||||||||||||    
T  5488387 atctcaagtagaacaactccaaagctgaaaacatcagattttattgagaaggatccatccgctgcatattctggaggcatatatccact 5488475  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 13855413 - 13855371
Alignment:
Q  72 acgccaaagctaaaaacatctgatttgattgaaaagaatccat 114  Q
    |||||||||||||| |||||||||||||| ||||| |||||||    
T  13855413 acgccaaagctaaatacatctgatttgatagaaaataatccat 13855371  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 3123119 - 3123011
Alignment:
Q  37 tgttccttttaccactgagaatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacat 136  Q
    |||||||||| |||||||  |||||||| |  |  ||||||||||| ||||||||||| || | |||||| || || || | |||||| ||||||| |||    
T  3123119 tgttcctttttccactgatgatctctagcaaaagaacgccaaagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccat 3123020  T
Q  137 atatccact 145  Q
     ||||||||    
T  3123019 gtatccact 3123011  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 5501202 - 5501290
Alignment:
Q  57 atctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||| ||||| || || ||||| ||| ||||||| ||||| ||||| ||| ||||||||   ||||| ||||||| ||||||||||||    
T  5501202 atctcaagtagaacaactccaaaactataaacatcagattttattgagaaggatccatccgctgcatattctggaggcatatatccact 5501290  T

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Target: scaffold0090 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 8082 - 8126
Alignment:
Q  71 tacgccaaagctaaaaacatctgatttgattgaaaagaatccatc 115  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||    
T  8082 tacgccaaagctaaatacatctgatttgatagaaaataatccatc 8126  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 15703512 - 15703579
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatcc 142  Q
    ||||||||||||||||| ||||| | |||||| |||||| ||| |||||| ||||||| ||| |||||    
T  15703512 ccaaagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatcc 15703579  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 15805176 - 15805246
Alignment:
Q  75 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 145  Q
    ||||||||||||||||| ||||| | |||||| || ||| ||| |||||| ||||||| ||| ||||||||    
T  15805176 ccaaagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccact 15805246  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 20243890 - 20243799
Alignment:
Q  56 aatctctagtaggactacgccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccactac 147  Q
    |||||||||||| | ||| |||||||||||||||||||||||   |||||| ||||| | ||  ||||| || |||||||| || |||||||    
T  20243890 aatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtagccactac 20243799  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 20231818 - 20231777
Alignment:
Q  56 aatctctagtaggactacgccaaagctaaaaacatctgattt 97  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  20231818 aatctctagtagcaatacaccaaagctaaaaacatctgattt 20231777  T

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