View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_27 (Length: 376)
Name: NF3992_low_27
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 5105602 - 5105253
Alignment:
| Q |
10 |
caatgagataccgatgctggaggtgaaatcgataaaaggaaatgagaagtttgaagaagatgacacctcaaaagatgagaatgccaattttcaaaaggtc |
109 |
Q |
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| T |
5105602 |
caatgagataccgatgatggaggtgaaatcgataaaaggaaaagagaaacttgaagaagatgacacctcaaaagatgaggatgctaattttcaaaaggtc |
5105503 |
T |
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| Q |
110 |
attaaagccttagcaacatttataacaaagacactaatcaaggaaatgtttaagcaaagtccgtgttgtgttaaatttcttcaagacattaagaaggtga |
209 |
Q |
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| T |
5105502 |
attaaagccttagcaacatttataacaaagacactaatcaaggaaatgtttaagcaaagtccgtgttgtgttaattttcttcaagacattaagaaggcga |
5105403 |
T |
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| Q |
210 |
caaccaaacaatgagacgaagaatttgcctctataacaaaaaattgttgtgatattattgaaatacaggtcccacaaaaagcttgatgacccatgaagct |
309 |
Q |
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| T |
5105402 |
caaccaaacaatgagatgaagaatttgtctctataacaaaaaattgttgtgatattattgaaatacaggtcccacaaaaagcttgaagacccatgaagct |
5105303 |
T |
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| Q |
310 |
tcaatgttcctatgattatgtccaatgattataggaattaatctctcaac |
359 |
Q |
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| T |
5105302 |
tcaatgttcctatgattatgtccaatgattataggaattaatctctcaac |
5105253 |
T |
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