View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_29 (Length: 373)
Name: NF3992_low_29
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4167088 - 4167352
Alignment:
| Q |
1 |
attagtttttccaagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctg |
100 |
Q |
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| T |
4167088 |
attagtttttccaagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctg |
4167187 |
T |
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| Q |
101 |
caacttaccgaattatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatgg |
200 |
Q |
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| T |
4167188 |
caacttaccgaaatatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatgg |
4167287 |
T |
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| Q |
201 |
tatcatgtagattacatcgtctgctatatccaactatttcgtaactgatgtatgtcacttacaat |
265 |
Q |
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| T |
4167288 |
tatcatgtagattacatcgtctgctatatccaactaattcgtaactgatgtatgtcacttacaat |
4167352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4151319 - 4151586
Alignment:
| Q |
1 |
attagtttttccaagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctg |
100 |
Q |
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| T |
4151319 |
attagtttttccaagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctg |
4151418 |
T |
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| Q |
101 |
caacttaccgaattatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatgg |
200 |
Q |
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| T |
4151419 |
caacttaccgaaatatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatgg |
4151518 |
T |
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| Q |
201 |
tatcatgtagattacatcgtctgctatatccaactatttcgt---aactgatgtatgtcacttacaat |
265 |
Q |
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| T |
4151519 |
tatcatgtagattacatcgtctgctatatccaactatttcgtataaactgatgtctgtcacttacaat |
4151586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 4167474 - 4167547
Alignment:
| Q |
263 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
336 |
Q |
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| T |
4167474 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
4167547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 7021167 - 7021244
Alignment:
| Q |
67 |
tagatagaatgtttaaga-tttatttgttttcctgcaacttaccgaattatcgtttctattttgtttcattttctata |
143 |
Q |
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| T |
7021167 |
tagatagcatgtttaagaatttatttattttcctgcaacttattgaattatcgtttctattttgtttcattttctata |
7021244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 7021282 - 7021325
Alignment:
| Q |
196 |
catggtatcatgtagattacatcgtctgctatatccaactattt |
239 |
Q |
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| T |
7021282 |
catggtatcatatagattacatcgtctgctgtatccaactattt |
7021325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 4152183 - 4152241
Alignment:
| Q |
263 |
aatgctcgatgaatttcatttta-----tatcaagtcctgcatgtaacgcagattatta |
316 |
Q |
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| T |
4152183 |
aatgcttgatgaatttcattttagctactatcaagtcctgcatgtaacgcagattatta |
4152241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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