View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_33 (Length: 342)
Name: NF3992_low_33
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 45378678 - 45378372
Alignment:
| Q |
18 |
aaaaattgacctaatcatgaaacaaactaaataagatgacatattatttattatctggacggtgctaaactaaatatgacacgtccaaggcagaatccaa |
117 |
Q |
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| T |
45378678 |
aaaaattgacctaatcatgaaacaaactaaataagatgacatattatttatcatctggacggtgctaaactaaatatgacacgtccaaggcagaatccaa |
45378579 |
T |
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| Q |
118 |
taccaactcttctctttccacgtgtccctcgattcatttcatcacaaacattatttattattaattgtatatgagagagggaccattcctattgtttaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378578 |
taccaactcttctctttccacgtgtccctcgattcatttcatcagaaacattattt---attaattgtatatgagagagggaccattcctattgtttaga |
45378482 |
T |
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| Q |
218 |
aagaattccacttgcatacgccaaatacctaggtagtttgaacctcaacaaactttactcgtttaaccgttttctcagttatcttcatcttaaatcaaat |
317 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378481 |
aagaattgcacttgcatacgccaaatacctatgtagtttgaacctgaacaaactttactcgtttaaccgttttctcagttatcttcatcttaaatcaaat |
45378382 |
T |
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| Q |
318 |
cgtctctgct |
327 |
Q |
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|||||||||| |
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| T |
45378381 |
cgtctctgct |
45378372 |
T |
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