View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_38 (Length: 304)
Name: NF3992_low_38
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 17377676 - 17377978
Alignment:
| Q |
1 |
tcttcacccaaatttatcctcctgtccaaggatctctcccacatgtaagctgatttagtagttcctagatgtatgtctggtgttttcgttagtttcaata |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17377676 |
tcttcacgcaaatttatcctcctgtccaaggatctctcccacatgtaagctgattcagtagttcctagatgtatgtctggtgttttcgttagtttcaata |
17377775 |
T |
|
| Q |
101 |
cttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17377776 |
cttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattt |
17377875 |
T |
|
| Q |
201 |
tcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattatctttttctatctgttttcttaccaacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17377876 |
tcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattatcttttcctatctgttttcttaccaacct |
17377975 |
T |
|
| Q |
301 |
ttg |
303 |
Q |
| |
|
||| |
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|
| T |
17377976 |
ttg |
17377978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 17392793 - 17392997
Alignment:
| Q |
10 |
aaatttatcctcctgtccaaggatctctcccacatgtaagctgattt--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt |
107 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||| | || ||||||||||||||| |||||||||| ||||||||| ||| | || |
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| T |
17392793 |
aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcgatattcacta |
17392892 |
T |
|
| Q |
108 |
ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat |
207 |
Q |
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|
||||||||||||||||||| |||||||||||||||| || ||| | || | ||||||||||| ||||||||||||||||||| ||| |||||||| ||| |
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| T |
17392893 |
ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat |
17392991 |
T |
|
| Q |
208 |
gagcca |
213 |
Q |
| |
|
|||||| |
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|
| T |
17392992 |
gagcca |
17392997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 17393030 - 17393110
Alignment:
| Q |
225 |
tttgtattgagcataatttaccaagcttcttttgccgttatagatt--atctttttctatctgttttcttaccaacctttg |
303 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
17393030 |
tttgtattgagcataatttcccatgcatcctttgctgttatagcatggatctttttctatctgtttttttaccaacctttg |
17393110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 17389722 - 17389769
Alignment:
| Q |
220 |
ctttgtttgtattgagcataatttaccaagcttcttttgccgttatag |
267 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
17389722 |
ctttgtatgtattgagcataatttaccaagcttcctttgctgttatag |
17389769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 17384082 - 17384124
Alignment:
| Q |
10 |
aaatttatcctcctgtccaaggatctctcccacatgtaagctg |
52 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
17384082 |
aaatttatcctcttgtccaaggatctctccctcatgtaagctg |
17384124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 17384143 - 17384248
Alignment:
| Q |
59 |
tagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct |
158 |
Q |
| |
|
||||||| |||||||| | ||| |||| |||| || ||||| || || |||||| ||||||||||| |||||||||||||||| |||||| | |||| |
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| T |
17384143 |
tagttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtct |
17384242 |
T |
|
| Q |
159 |
gccaat |
164 |
Q |
| |
|
||||| |
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|
| T |
17384243 |
accaat |
17384248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
| Q |
80 |
gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca |
179 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| ||||| | ||| |||||||||||| ||| |||| |
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| T |
26052689 |
gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca |
26052590 |
T |
|
| Q |
180 |
ttgttttgttagctcaaattttcgcgatgagcca |
213 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||| |
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|
| T |
26052589 |
ttgttttgttaactc-aattttcgtgatgagcca |
26052557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 15785027 - 15785065
Alignment:
| Q |
14 |
ttatcctcctgtccaaggatctctcccacatgtaagctg |
52 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
15785027 |
ttatcctcctgtccaaaaatctctcccacatgtaagctg |
15785065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 32226939 - 32226975
Alignment:
| Q |
12 |
atttatcctcctgtccaaggatctctcccacatgtaa |
48 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| |
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|
| T |
32226939 |
atttatccttctgtccaaggatctctccgacatgtaa |
32226975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 32241613 - 32241577
Alignment:
| Q |
12 |
atttatcctcctgtccaaggatctctcccacatgtaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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|
| T |
32241613 |
atttatcctcctgtccaaggatctctccggcatgtaa |
32241577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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