View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_4 (Length: 744)
Name: NF3992_low_4
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 7 - 728
Target Start/End: Original strand, 11471260 - 11472001
Alignment:
| Q |
7 |
tttacgtcaaatggtatatagttcggtgcactataacaccattattaacatccttcaaaatgaagtttgattttgagtgaaaaataacattccaattgtt |
106 |
Q |
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| T |
11471260 |
tttaagtcaaatggtatatagttcggtgcactataacaccattat---catccttcaaaacgaagtttgattttg-gtgaaaaataacattccaattgtt |
11471355 |
T |
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| Q |
107 |
gatnnnnnnnnnnnnnnn-ttagttacatgttacatattttccttctataatttctatt-aggacaattacctctccggatcctttaaattttacatttg |
204 |
Q |
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| T |
11471356 |
gataaaaaaatataaaaaattagttacatgttacatattttacttctttaatttttttttaggccaaatacatcccggggtcttttaaattttacatttg |
11471455 |
T |
|
| Q |
205 |
tactatatcaatgttctaaccgaatccattttacattaaagcatttttctgaattggattttgtgaaatactgaacttgagaaatgaatttgattttgaa |
304 |
Q |
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| T |
11471456 |
tactatatcaatgttctaaccgaatccattttacatgaaagcatttttctgaattggattttgtgaaatactgaacttgagaaatgaatttgattttgaa |
11471555 |
T |
|
| Q |
305 |
gaaaaatggatatggaatggttttagagcttttaaaatttagaatgtccgattagaaacttctgcaatgcgtatggtggtttttctttttcatatttaat |
404 |
Q |
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| T |
11471556 |
gaaaaatggatatggaatggttttagagcttttaaaatttagaatgtccgattagaaacttctgcaatgcgtatggtagtttttctttttcatatttaat |
11471655 |
T |
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| Q |
405 |
tctgga-nnnnnnnnnaaataaaaaattgatg---------agatgaagatcttggattaaggatgaagatgaagatttgtacatgacacatcactacta |
494 |
Q |
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| T |
11471656 |
tctggattttttttttaaataaaaaattgatgagatgaagaagatgaagatcttggattaaggatgaagatgatgatttgtacatgacacatcactacta |
11471755 |
T |
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| Q |
495 |
aacaaccacataagcagtttttaacagagtttta-aggaaaaggtaacgtcgcaaac------------attgtgtaacttaaaggatcaatttaaaatt |
581 |
Q |
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| T |
11471756 |
aacaaccacataagcagtttttaacagagttttataggaaaatgtaacgtcgcaaacattgtcgtaaatattgtgtaacttaaaggatcaatttaaaatt |
11471855 |
T |
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| Q |
582 |
taaaaaatttaaaggaccgatctgatacaaagtgtaaaatttaaaggaccctagaaaatatttgacctttcttttatttgcagttaagaaatcataattt |
681 |
Q |
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| T |
11471856 |
taaaaaatttaaaggatcgatccaatacaaa-tgtaaaacttaaaggaccctaggagatatttgacctttcttttatttgcggttaagaaatcataattt |
11471954 |
T |
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| Q |
682 |
taaaagtgaattgtcacttcaaatatttactatgaagagtcaaatct |
728 |
Q |
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| T |
11471955 |
taaaagtgaattgtcacttcaaatatttactatgaaaagtcaaatct |
11472001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 11477937 - 11477978
Alignment:
| Q |
55 |
catccttcaaaatgaagtttgattttgagtgaaaaataacat |
96 |
Q |
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| T |
11477937 |
catccttcaaaatgaagtttgattttgagtgaaaaataacat |
11477978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 11484552 - 11484600
Alignment:
| Q |
55 |
catccttcaaaatgaagtttgattttgagtgaaaaataacattccaatt |
103 |
Q |
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| T |
11484552 |
catccttcaaaatgaagtttgatttttcgtgaaaaatgacattcgaatt |
11484600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 631
Target Start/End: Complemental strand, 39853641 - 39853572
Alignment:
| Q |
561 |
ttaaaggatcaatttaaaatttaaaaaatttaaaggaccgatctgatacaaagtgtaaaatttaaaggacc |
631 |
Q |
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| T |
39853641 |
ttaaagaatcaatctaaaattttagaaatttaaaggacatatccgatacaaa-tgtaaaatttaaaggacc |
39853572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 637
Target Start/End: Original strand, 32702444 - 32702523
Alignment:
| Q |
557 |
taacttaaaggatcaatttaaaatttaaaaaatttaaaggaccgatctgatacaaagtgtaaaatttaaaggaccctagaa |
637 |
Q |
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| T |
32702444 |
taacttaaaggaccaatttaaaactttaaaaacttaaaggactgatccggtacaaa-cgtaaaacttaaagaaccctagaa |
32702523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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