View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_40 (Length: 295)
Name: NF3992_low_40
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 47387536 - 47387265
Alignment:
| Q |
11 |
catcatcattaaaagcaccttctttacataaaattaaacattgttagacacatcatctaatattcagaacaaatatttcatattttaaagatattataga |
110 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |
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| T |
47387536 |
catcatcattaaaagcaccttctttacagaaaattaaacattgttagacacatcatctaatattcataacaaatatttcatatttcaaagatattatata |
47387437 |
T |
|
| Q |
111 |
tttttccataaaatcctacaacttaaagattaaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcatttaaaacata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47387436 |
tttttccataaaatcctacaacttaaagattaaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcatttaaaacata |
47387337 |
T |
|
| Q |
211 |
actatcatattctacaaatgcaaatcatttcgttgaaaacataacaaatatttcattgtggaactagattgt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47387336 |
actatcatattctacaaatgcaaatcattttattgaaaacataacaaatatttcattgtggaactagattgt |
47387265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 39040169 - 39040033
Alignment:
| Q |
23 |
aagcaccttctttacataaaattaaacattgttagacacatcatctaatattcagaacaaatatttcatattttaaagatattatagatttttccataaa |
122 |
Q |
| |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39040169 |
aagcatctactttacagaaaattaaacattgttagacacatcatctaatattctgaataaatatttcatattttaaagatattagagatttttccataaa |
39040070 |
T |
|
| Q |
123 |
atcctacaacttaaagattaaaatgaataaggaagtt |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39040069 |
atcctacaacttaaagattaaaatgaataaggaagtt |
39040033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 39040023 - 39039883
Alignment:
| Q |
142 |
aaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcattt-aaaacataactatcatattctacaaatgcaaatcattt |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||| |
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| T |
39040023 |
aaaatgaataaggaagttggaaaataaagacttaaagattacaataaaaacatattcatttaaaaatataactatcatattttactaatgcaaatcattt |
39039924 |
T |
|
| Q |
241 |
cgttgaaaacataacaaatatttcattgtggaactagattgt |
282 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
39039923 |
cgttgaaaacataacaaa-ggttcattgtggaactagattgt |
39039883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 9715114 - 9714861
Alignment:
| Q |
23 |
aagcaccttctttacataaaattaaaca-ttgttagacacatcatctaatattcagaacaaatatttcatattttaaagatattatagatttttccataa |
121 |
Q |
| |
|
|||| ||| |||| || ||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||| ||| ||||||||||||||||||||| |
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|
| T |
9715114 |
aagctcctactttgcagaaaattaaacaattgttagacacatcatctaatattttgaataaatatttcatgtttcaaaaatattatagatttttccataa |
9715015 |
T |
|
| Q |
122 |
aatcctacaacttaaagattaaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcatttaaaacataactatcatatt |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| ||| || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
9715014 |
aatcctacaacttaaagattaaaataaataaggaagtt--ttgctaaa-----aaaaatgacaataaaaacatattcatttaaaacattactatcatatt |
9714922 |
T |
|
| Q |
222 |
ctacaaatgcaaatcatttcgttgaaaacataacaaatatttcattgtggaactagattgt |
282 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
9714921 |
ctgcaaatataaatcatttcgttgaaaacataacaaaggtttcattgtggaactagattgt |
9714861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 25109011 - 25108825
Alignment:
| Q |
10 |
acatcatcattaaaagcaccttctttacataaaattaaacattgttagacacatcatctaatattcagaacaaatatttcatattttaaagatattatag |
109 |
Q |
| |
|
||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
25109011 |
acatcttcatttaaagtacctactttacaaaaaattaaacattgttagacacatcatctaatattct-----aatatttcatatttgaaagatattatag |
25108917 |
T |
|
| Q |
110 |
atttttccataaaatcctacaacttaaagattaaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcatt |
201 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25108916 |
tttttttcataaaatcctacaacttaaagattaaaacgaataaggaagttagaaaataaagacttaaagattacaataaaaacatattcatt |
25108825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 25168103 - 25167917
Alignment:
| Q |
10 |
acatcatcattaaaagcaccttctttacataaaattaaacattgttagacacatcatctaatattcagaacaaatatttcatattttaaagatattatag |
109 |
Q |
| |
|
||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
25168103 |
acatcttcatttaaagtacctactttacaaaaaattaaacattgttagacacatcatctaatattct-----aatatttcatatttgaaagatattatag |
25168009 |
T |
|
| Q |
110 |
atttttccataaaatcctacaacttaaagattaaaatgaataaggaagttgaaaaataaagacttaaagattacaataaaaacatattcatt |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25168008 |
tttttttcataaaatcctacaacttaaagattaaaacgaataaggaagttagaaaataaagacttaaagattacaataaaaacatattcatt |
25167917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 21300521 - 21300592
Alignment:
| Q |
187 |
aaaaacatattcatttaaaacataactatcatattctacaaatgcaaatcatttcgttgaaaacataacaaa |
258 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
21300521 |
aaaaatatattcatttaaaacatcactctcatattctacaaatgcaagtcatttcattgaaagcataacaaa |
21300592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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