View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_41 (Length: 294)
Name: NF3992_low_41
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 43111652 - 43111369
Alignment:
| Q |
1 |
agactggggtcatttctgatgatgaattgcttgatttgctggacctgtctttgtcatccgacacttcaaatacggttataagagcccgggagctgttgag |
100 |
Q |
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| T |
43111652 |
agactggggtcatttctgatgatgaattgcttgatttgctggacctgtctttgtcatccgacacttcaaatacggttataagagcccgggagctgttgag |
43111553 |
T |
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| Q |
101 |
atcaaggatagatcctttacaacttatatctcagttagcgaatcttattatggacattcttgcagggaagtgtgaacttactggttcggaaatcagaaga |
200 |
Q |
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| T |
43111552 |
atcaaggatagatcctttacaacttatatctcagctagcgaatcttattatggacattcttgcagggaagtgtgaacttactggttctgaaatcagaaga |
43111453 |
T |
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| Q |
201 |
agattttctgatagacatatttgtaagggcttttaaataccttatcatggacatgtttgaatatatgggctattggactttcat |
284 |
Q |
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| T |
43111452 |
agattttctgatagacatatttgtaagggcttttaaataccttatcatggacatgtttgtatatatgggctattagactttcat |
43111369 |
T |
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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 34259493 - 34259345
Alignment:
| Q |
21 |
gatgaattgcttgatttgctggacctgtctttgtcatccgacacttcaaatacggttataagagcccgggagctgttgagatcaaggatagatcctttac |
120 |
Q |
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|||||||||||||||||||| || ||| |||||||| | ||||| |||||||| ||||||||||| || |||||| ||||||||||||| |||||||| | |
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| T |
34259493 |
gatgaattgcttgatttgcttgatctggctttgtcacctgacacatcaaatactgttataagagctcgcgagctgatgagatcaaggatcgatcctttgc |
34259394 |
T |
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| Q |
121 |
aacttatatctcagttagcgaatcttattatggacattcttgcagggaa |
169 |
Q |
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| T |
34259393 |
aacttgtgtcacagttggtgaatctcataatggacatccttgctgggaa |
34259345 |
T |
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