View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_42 (Length: 293)
Name: NF3992_low_42
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 34864875 - 34865036
Alignment:
| Q |
18 |
tgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacattggtggttgt |
117 |
Q |
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| T |
34864875 |
tgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacattggtggttgt |
34864974 |
T |
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| Q |
118 |
gactgtaaggctacacactcatgttgcttctttttcatgtggcaaagacaaaactagacttg |
179 |
Q |
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| T |
34864975 |
gactgtaaggctacacactcatgttgcttctttttcacgtggcaaagacaaaactagacttg |
34865036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 34869258 - 34869401
Alignment:
| Q |
18 |
tgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacattggtggttgt |
117 |
Q |
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| T |
34869258 |
tgaaggtgatgggggtgagattcaagcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacattggtggttgt |
34869357 |
T |
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| Q |
118 |
gactgtaaggctacacactcatgttgcttctttttcatgtggcaaa |
163 |
Q |
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| T |
34869358 |
gattgtaaggc--cacactccttttgctactttttcacgaggcaaa |
34869401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 34865096 - 34865144
Alignment:
| Q |
239 |
tgcagctgttttggagaaacaccgtgcaggtcaattgattcctcttctc |
287 |
Q |
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| T |
34865096 |
tgcagctattttggagaaacaccgtgcaggtcaattgattcctcttctc |
34865144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 34869473 - 34869521
Alignment:
| Q |
239 |
tgcagctgttttggagaaacaccgtgcaggtcaattgattcctcttctc |
287 |
Q |
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| T |
34869473 |
tgcagctgttttggagaaacaccggacaggtcaattggttccccttctc |
34869521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 13381147 - 13381077
Alignment:
| Q |
56 |
agtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacattggtggttgtgactgtaag |
126 |
Q |
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| T |
13381147 |
agtggactggtcagaggactgtgccaaatgtttttattggcggcaaccacattggtggctgtgactgtaag |
13381077 |
T |
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