View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_43 (Length: 292)
Name: NF3992_low_43
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 47387513 - 47387788
Alignment:
| Q |
1 |
aagaaggtgcttttaatgatgatggagctcattgcgatattattgaacattgtaattcaaacaactgcatcgaatattacaagtcaatgctctttgggtt |
100 |
Q |
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| T |
47387513 |
aagaaggtgcttttaatgatgatgaagctcattgcgatattattgaacattgtaattcaaacaactgcatcgaatattgcaagtcaatgttctttgggtt |
47387612 |
T |
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| Q |
101 |
tggagagtgttatcgaaacggatactattgttgctattgatatgtttgacgatttcaagttttcaatatccttgtaatggattaacgattatgaaaactt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47387613 |
tggaaagtgttatcgaaacggatactattgttgctattgatatgtttgacgattgcaagttttcaatatccttgtaatggattaacgattatgaaaactt |
47387712 |
T |
|
| Q |
201 |
gtaatcgtcaaaaatatcaatagcaacaatcggtggattaacgattcttcttatacataccgtgtatgtccttttt |
276 |
Q |
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| T |
47387713 |
gtaatcgtcaaacatatcaatagcaacaatcggtggattaacgattattcttatacttaccttgtttgtccttttt |
47387788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 39040280 - 39040335
Alignment:
| Q |
123 |
tactattgttgctattgatatgtttgacgatttcaagttttcaatatccttgtaat |
178 |
Q |
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| T |
39040280 |
tactgttgttgctattgataggtttgacgattacaagttttcaatatccttataat |
39040335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 47387742 - 47387639
Alignment:
| Q |
127 |
attgttgctattgatatgtttgacgatttcaagttttcaatatccttgtaatggatt--aacgattatgaaaacttgtaatcgtcaaaaatatcaatagc |
224 |
Q |
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| T |
47387742 |
attgttgctattgatatgtttgacgattacaagttttcataatcgt--taatccattacaaggatattgaaaacttgcaatcgtcaaacatatcaatagc |
47387645 |
T |
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| Q |
225 |
aacaat |
230 |
Q |
| |
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|||||| |
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|
| T |
47387644 |
aacaat |
47387639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 39040322 - 39040285
Alignment:
| Q |
192 |
tgaaaacttgtaatcgtcaaaaatatcaatagcaacaa |
229 |
Q |
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| T |
39040322 |
tgaaaacttgtaatcgtcaaacctatcaatagcaacaa |
39040285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 25109123 - 25109161
Alignment:
| Q |
140 |
atatgtttgacgatttcaagttttcaatatccttgtaat |
178 |
Q |
| |
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| T |
25109123 |
atatgtttgacgattacaagttttcaatatccttgtaat |
25109161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 25168215 - 25168253
Alignment:
| Q |
140 |
atatgtttgacgatttcaagttttcaatatccttgtaat |
178 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
25168215 |
atatgtttgacgattacaagttttcaatatccttgtaat |
25168253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 9715227 - 9715277
Alignment:
| Q |
128 |
ttgttgctattgatatgtttgacgatttcaagttttcaatatccttgtaat |
178 |
Q |
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|||||||||| |||| | ||||||||| ||||||||||||||||||||||| |
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| T |
9715227 |
ttgttgctatggataggcttgacgattacaagttttcaatatccttgtaat |
9715277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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