View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_45 (Length: 291)
Name: NF3992_low_45
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 21647682 - 21647941
Alignment:
| Q |
19 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21647682 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgcc |
21647781 |
T |
|
| Q |
119 |
aggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaact |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21647782 |
aggacggttcctaccttccaaaacgacaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaact |
21647881 |
T |
|
| Q |
219 |
gtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatg |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21647882 |
gtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatg |
21647941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 22770146 - 22770404
Alignment:
| Q |
19 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgcc |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||| |||||||| || || |
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| T |
22770146 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggccgcaaacttatcctcattccctatcttctgagtataaactctaccacc |
22770245 |
T |
|
| Q |
119 |
aggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaact |
218 |
Q |
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| T |
22770246 |
aggacggttcttaccttccaaaacaacaaccttataaccaaacgacaaaagctgcctcgctgcagccaacccagcaaggccagccccaataacaacaacc |
22770345 |
T |
|
| Q |
219 |
gtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgat |
277 |
Q |
| |
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|| |||| |||||||||||| || ||||| |||||||| ||||||| ||||||||||| |
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|
| T |
22770346 |
gttccttccgtcgcctcaggcaactgagaagtaaatgatggcaaaaccccaaaattgat |
22770404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 39175049 - 39174800
Alignment:
| Q |
25 |
ggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacg |
124 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| || |||||| | | | | ||||||| | ||||||| | |
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|
| T |
39175049 |
ggttagcatgaattccagtaattactctcccaccaagatctgcgactgcaaacttaccctcgttccctatcttctcaatataaactcccctgccaggatg |
39174950 |
T |
|
| Q |
125 |
gttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaactgtccct |
224 |
Q |
| |
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|| ||||||||||||||| ||||||| |||||||| || || | | ||| || |||| ||| ||| ||| |||| ||||||||||||| || ||||| |
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| T |
39174949 |
gtacctaccttccaaaaccacaaccttgtaaccaaacaaaaatatctacctcgcagcagccaacccatcaaggccaacaccaataacaaccacgatccct |
39174850 |
T |
|
| Q |
225 |
ttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaatt |
274 |
Q |
| |
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| | |||||| ||| || ||||| ||||| || ||||||| |||||||| |
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| T |
39174849 |
tccatcgccttaggcaactgagaagtaaacgaaggcaaaaccccaaaatt |
39174800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 39171146 - 39171011
Alignment:
| Q |
25 |
ggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacg |
124 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| | ||||||||||| ||| || |||||| | | | | |||||||| | ||||||||| |
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|
| T |
39171146 |
ggtttgcatgaattccagtaattactctcccaccaagatctgggactgcaaacttacccttgttccctatcttctcaatataaactctcctgccaggacg |
39171047 |
T |
|
| Q |
125 |
gttcctaccttccaaaacggcaaccttataaccaaa |
160 |
Q |
| |
|
|| ||||||||||||||| ||||||| |||||||| |
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| T |
39171046 |
gtacctaccttccaaaaccacaaccttgtaaccaaa |
39171011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 39171499 - 39171722
Alignment:
| Q |
29 |
agcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacggttc |
128 |
Q |
| |
|
|||||||||||||||||| || ||| |||| || ||| | ||||||||||| |||| | || ||||| | ||| |||||||| |||||||| ||||| |
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| T |
39171499 |
agcatgaattccagtaataacactca-accacgacctacgactgcaaacttaccctcgcttcccatcctctaagtataaactct--cgccaggatggttc |
39171595 |
T |
|
| Q |
129 |
ctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaactgtccctttcg |
228 |
Q |
| |
|
||||||||||||| ||||||| || |||| ||||||||||||| | |||| ||| ||| ||| | || |||| ||||||||||| |||||| || |
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|
| T |
39171596 |
ataccttccaaaaccacaaccttgcaatcaaacgacaacagttgcctctcggcagccaacccatcaaggacaacaccgataacaacaacaatcccttccg |
39171695 |
T |
|
| Q |
229 |
tcgcctcaggaaaatgagatgtaaatg |
255 |
Q |
| |
|
|| ||||||| || ||||| ||||||| |
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| T |
39171696 |
tcacctcaggcaactgagaagtaaatg |
39171722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 39175400 - 39175521
Alignment:
| Q |
29 |
agcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacggttc |
128 |
Q |
| |
|
|||||||||||||||||| || ||| |||| || ||| | ||||||||||| |||| | || ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
39175400 |
agcatgaattccagtaataacactca-accacgacctatgactgcaaacttaccctcgcttcccatcctctgagtataaactctcccgccaggatggttc |
39175498 |
T |
|
| Q |
129 |
ctaccttccaaaacggcaacctt |
151 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
39175499 |
ctaccttccaaaaccacaacctt |
39175521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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