View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_50 (Length: 276)
Name: NF3992_low_50
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_50 |
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| [»] scaffold0285 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 59 - 260
Target Start/End: Original strand, 35764100 - 35764298
Alignment:
| Q |
59 |
ctaaaatcctcatcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatct |
158 |
Q |
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| T |
35764100 |
ctaaaatcctcatcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatct |
35764199 |
T |
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| Q |
159 |
ggtgccctccaatcttccattggataaaagtaaatactgatggggcggcttcaaaacatccccttaatgcttctgctgcaggtgggctgttcagggataa |
258 |
Q |
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| T |
35764200 |
ggtgccctccaatcttccattggataaaagtaaatactgatagggcggcttcaaaacatccccttaatgctt---ctgcaggtgggctgttcagggataa |
35764296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 17962988 - 17962924
Alignment:
| Q |
71 |
tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc |
135 |
Q |
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| T |
17962988 |
tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc |
17962924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 26229894 - 26229766
Alignment:
| Q |
106 |
cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatggggcg |
205 |
Q |
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| T |
26229894 |
cttcagagtcccaattcatcctcctaaagcccctatcatcaaggaagtgatttggtctcctccaatcttcaattggataaaggtgaacactgatggtgct |
26229795 |
T |
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| Q |
206 |
gcttcaaaacatccccttaatgcttctgc |
234 |
Q |
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| T |
26229794 |
gcttcaaaaaaccctccaaatgcttctgc |
26229766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 23139049 - 23138941
Alignment:
| Q |
106 |
cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatggggcg |
205 |
Q |
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| T |
23139049 |
cttcagagtcccaattcatcctcctaaagcccctatcatcaaggaagtgatttggtctcctccaatcttcaattggataaaggtgaacactgatggtgct |
23138950 |
T |
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| Q |
206 |
gcttcaaaa |
214 |
Q |
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| T |
23138949 |
tcttcaaaa |
23138941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 815677 - 815613
Alignment:
| Q |
71 |
tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc |
135 |
Q |
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| T |
815677 |
tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc |
815613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 28688526 - 28688462
Alignment:
| Q |
71 |
tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc |
135 |
Q |
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| T |
28688526 |
tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc |
28688462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 14916 - 14821
Alignment:
| Q |
106 |
cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatgg |
201 |
Q |
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| T |
14916 |
cttcagagttccaattcatcctcctaaggcacctcaaattaaggaagttatctggtttcctccaattttcaattggattaaggtgaacactgatgg |
14821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 23282120 - 23282041
Alignment:
| Q |
122 |
caccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatgg |
201 |
Q |
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| T |
23282120 |
caccctcctaaggctccaagtattaaagaagttatctggacccatccaatcttcaattggataaaagcaaacactaatgg |
23282041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 23592521 - 23592464
Alignment:
| Q |
141 |
aaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactga |
198 |
Q |
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| T |
23592521 |
aaatcaaagaagtgatatggtcccctccaatcttcaattggatcaaggtgaatactga |
23592464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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