View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_53 (Length: 259)

Name: NF3992_low_53
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_low_53
NF3992_low_53
[»] chr2 (1 HSPs)
chr2 (2-258)||(4532806-4533062)
[»] scaffold0006 (2 HSPs)
scaffold0006 (4-177)||(214728-214911)
scaffold0006 (4-130)||(128339-128475)
[»] chr1 (8 HSPs)
chr1 (42-111)||(19072648-19072717)
chr1 (42-111)||(19120538-19120607)
chr1 (120-191)||(23833545-23833616)
chr1 (111-186)||(51796307-51796382)
chr1 (4-37)||(19073508-19073541)
chr1 (4-37)||(19121398-19121431)
chr1 (105-161)||(19072552-19072608)
chr1 (105-161)||(19120442-19120498)
[»] chr6 (3 HSPs)
chr6 (45-111)||(21801657-21801723)
chr6 (105-161)||(21801763-21801819)
chr6 (4-37)||(21800837-21800870)
[»] chr7 (1 HSPs)
chr7 (120-191)||(4799925-4799996)
[»] chr5 (1 HSPs)
chr5 (115-184)||(7649285-7649354)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 4532806 - 4533062
Alignment:
Q  2 atgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4532806 atgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaag 4532905  T
Q  102 tgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacgggaggttgttatcttttcccataaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  4532906 tgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttagatataactcaagggaggttgttatcgtttcccataaata 4533005  T
Q  202 tatagtatatggtaataattattacaaacatggtcctgtagctcagttggttagagc 258  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4533006 tatagtatatggtaatgattattacaaacatggtcccgtagctcagttggttagagc 4533062  T

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Target: scaffold0006 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 214728 - 214911
Alignment:
Q  4 gaacagtgatgagcaacaaaggccacaagggatgagtga----------ccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttt 93  Q
    ||||||||||||||||||||||||||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  214728 gaacagtgatgagcaacaaaggccacaagggatgattgattatgtataaccaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttt 214827  T
Q  94 tatgaaagtgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacggga 177  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | |||||||| ||||    
T  214828 tatgaaagtgaaaacagaggggaggtttttgatgtttgggaaaatggaggggatgttaggtgcatttagaaataactcaaggga 214911  T

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Target: scaffold0006; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 128339 - 128475
Alignment:
Q  4 gaacagtgatgagcaacaaaggccacaagggatgagtgac----------caggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttt 93  Q
    |||| |||||||||||||||||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  128339 gaacggtgatgagcaacaaaggccacaagggatgattgattatgtataatcaggaatagaaataaattctcgcaacaaaaggcttgaattttaagagttt 128438  T
Q  94 tatgaaagtgaaaacagaggggaggtttttgatgttt 130  Q
    |||||||||||||||||||||||| ||||||||||||    
T  128439 tatgaaagtgaaaacagaggggagctttttgatgttt 128475  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 19072717 - 19072648
Alignment:
Q  42 accaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19072717 accaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 19072648  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 19120607 - 19120538
Alignment:
Q  42 accaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19120607 accaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 19120538  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 23833616 - 23833545
Alignment:
Q  120 ttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacgggaggttgttatctttt 191  Q
    ||||||||||| ||||| | |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||    
T  23833616 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaagggaggttgttatatttt 23833545  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 51796307 - 51796382
Alignment:
Q  111 aggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacgggaggttgttat 186  Q
    |||||||||||||||||||| | ||| |||||| || ||||| || ||||| ||| |||| | |||||||||||||    
T  51796307 aggggaggtttttgatgtttagaaaaatagaggagaggttagttgtatttagatagaactgaggggaggttgttat 51796382  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 19073541 - 19073508
Alignment:
Q  4 gaacagtgatgagcaacaaaggccacaagggatg 37  Q
    |||||||||||||||||||||| |||||||||||    
T  19073541 gaacagtgatgagcaacaaagggcacaagggatg 19073508  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 19121431 - 19121398
Alignment:
Q  4 gaacagtgatgagcaacaaaggccacaagggatg 37  Q
    |||||||||||||||||||||| |||||||||||    
T  19121431 gaacagtgatgagcaacaaagggcacaagggatg 19121398  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 19072608 - 19072552
Alignment:
Q  105 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 161  Q
    ||||||||||||| |||||||||||| ||||  | |||||||||||  |||||||||    
T  19072608 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttagtgcattta 19072552  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 19120498 - 19120442
Alignment:
Q  105 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 161  Q
    ||||||||||||| |||||||||||| ||||  | |||||||||||  |||||||||    
T  19120498 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttagtgcattta 19120442  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 21801657 - 21801723
Alignment:
Q  45 aggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 111  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21801657 aggaatagaaatacattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 21801723  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 21801763 - 21801819
Alignment:
Q  105 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 161  Q
    ||||||||||||| |||||||||||| ||||  | ||||||||||| ||||||||||    
T  21801763 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttggtgcattta 21801819  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 21800837 - 21800870
Alignment:
Q  4 gaacagtgatgagcaacaaaggccacaagggatg 37  Q
    |||||||||||||||||||||| |||||||||||    
T  21800837 gaacagtgatgagcaacaaagggcacaagggatg 21800870  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 4799996 - 4799925
Alignment:
Q  120 ttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacgggaggttgttatctttt 191  Q
    ||||||||||| ||||| | |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||    
T  4799996 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaagggaggttgttatatttt 4799925  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 7649285 - 7649354
Alignment:
Q  115 gaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataactcacgggaggttgtt 184  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||||| ||| |||||| | |||||||||    
T  7649285 gaggtttttgatgtttcagaaaatagaggggatgttaggtccatttagatagaactcaagagaggttgtt 7649354  T

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