View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_54 (Length: 256)

Name: NF3992_low_54
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_low_54
NF3992_low_54
[»] scaffold0074 (1 HSPs)
scaffold0074 (14-256)||(47873-48115)
[»] scaffold0007 (1 HSPs)
scaffold0007 (17-256)||(5400-5639)
[»] chr6 (8 HSPs)
chr6 (14-256)||(20085874-20086116)
chr6 (14-256)||(24385259-24385501)
chr6 (14-256)||(22205047-22205289)
chr6 (14-256)||(20237787-20238029)
chr6 (14-256)||(22131771-22132013)
chr6 (31-256)||(20205211-20205436)
chr6 (31-256)||(22099234-22099459)
chr6 (31-256)||(21971772-21972000)
[»] scaffold0264 (1 HSPs)
scaffold0264 (14-256)||(15824-16065)


Alignment Details
Target: scaffold0074 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 48115 - 47873
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48115 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 48016  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48015 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 47916  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47915 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 47873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 5639 - 5400
Alignment:
Q  17 cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5639 cacagaggtgaacgggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgttgga 5540  T
Q  117 ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  5539 ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaatcta 5440  T
Q  217 gaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    | ||||||||||||||  ||||||||||||||||||||||    
T  5439 gtatcttgttttgaatagtttgtttgaggaacaagctcat 5400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 20085874 - 20086116
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||   ||||||||||||||||||||||    
T  20085874 gaccacagaggcgaacaggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgtt 20085973  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  20085974 ggaggacagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaat 20086073  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  20086074 ctagaatcttggtttgaatgatttgtttgaggaacaagctcat 20086116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 24385501 - 24385259
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||| |||||||||||||||    
T  24385501 gaccacagagacgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgtt 24385402  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    |||||||| |||||||||||||||||||||||| |  || |||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24385401 ggaggacagataagagagaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaat 24385302  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  24385301 ctagaatcttgttttgaatcatttgtttgaggaacaagctcat 24385259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 22205289 - 22205047
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||  | ||| | ||| ||||||||||||||||    
T  22205289 gaccgcagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgtt 22205190  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  22205189 ggaggacaaataagagagaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaat 22205090  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    |||||||||||  ||||||| ||||||||||||||||||||||    
T  22205089 ctagaatcttgggttgaatgatttgtttgaggaacaagctcat 22205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 20237787 - 20238029
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || ||  |||||||||||||||    
T  20237787 gaccacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgtt 20237886  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||     
T  20237887 ggaagacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaa 20237986  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
     ||||||||||||||||||  ||||||||||||||||||||||    
T  20237987 ttagaatcttgttttgaatcatttgtttgaggaacaagctcat 20238029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 22131771 - 22132013
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || ||  |||||||||||||||    
T  22131771 gaccacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgtt 22131870  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||     
T  22131871 ggaagacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaa 22131970  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
     ||||||||||||||||||  ||||||||||||||||||||||    
T  22131971 ttagaatcttgttttgaatcatttgtttgaggaacaagctcat 22132013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 20205211 - 20205436
Alignment:
Q  31 ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 130  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||||   ||||  |||||| |||  | |||||||| ||  |||||||||| |    
T  20205211 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 20205310  T
Q  131 gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 230  Q
    |||||||||||| |||||| | |||||||||  |||||||||||| |||||||||||||||||||| ||  |||| ||||| | ||||||||||||| ||    
T  20205311 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 20205410  T
Q  231 atgttttgtttgaggaacaagctcat 256  Q
    ||  |||||| ||||| | |||||||    
T  20205411 atcatttgttcgaggagctagctcat 20205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 22099234 - 22099459
Alignment:
Q  31 ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 130  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||||   ||||  |||||| |||  | |||||||| ||  |||||||||| |    
T  22099234 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 22099333  T
Q  131 gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 230  Q
    |||||||||||| |||||| | |||||||||  |||||||||||| |||||||||||||||||||| ||  |||| ||||| | ||||||||||||| ||    
T  22099334 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 22099433  T
Q  231 atgttttgtttgaggaacaagctcat 256  Q
    ||  |||||| ||||| | |||||||    
T  22099434 atcatttgttcgaggagctagctcat 22099459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 21971772 - 21972000
Alignment:
Q  31 ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 130  Q
    ||||| |||||||||||||||||||| ||||||   ||||||||||||||||    ||   |||||| |||  | |||||||| ||  |||||||||| |    
T  21971772 ggaagatcacctcgacacatgaagagaccatacgcaatttcttccactttaagccaataaaattttttgccgatggtggcgttcgacaacaaataagaca 21971871  T
Q  131 gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaa---aatctagaatcttgttt 227  Q
    |||||| ||||| |||||| | |||||||||| |||  ||||||| |||||||||||||||||||| |||||||| ||||   | | ||||||||||| |    
T  21971872 gaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtat 21971971  T
Q  228 tgaatgttttgtttgaggaacaagctcat 256  Q
     ||||  |||||||||||| |||||||||    
T  21971972 ggaatcatttgtttgaggagcaagctcat 21972000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 15824 - 16065
Alignment:
Q  14 gaccacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt 113  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||  | ||| | |||  |||| ||||||||||    
T  15824 gaccgcagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgcca-ttgtggcgtt 15922  T
Q  114 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat 213  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  15923 ggaggacagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaat 16022  T
Q  214 ctagaatcttgttttgaatgttttgtttgaggaacaagctcat 256  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  16023 ctagaatcttggtttgaatgatttgtttgaggaacaagctcat 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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