View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_55 (Length: 252)
Name: NF3992_low_55
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 1878155 - 1877935
Alignment:
| Q |
14 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1878155 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcac |
1878056 |
T |
|
| Q |
114 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878055 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
1877956 |
T |
|
| Q |
214 |
attcagaatatatggtatatg |
234 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
1877955 |
attcagaatatatggtatatg |
1877935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 1884167 - 1883959
Alignment:
| Q |
14 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
113 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |||||| |
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| T |
1884167 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcac |
1884068 |
T |
|
| Q |
114 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
213 |
Q |
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||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||||||||||| |
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| T |
1884067 |
aacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaa |
1883968 |
T |
|
| Q |
214 |
attcagaat |
222 |
Q |
| |
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|||||||| |
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| T |
1883967 |
gttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 1890811 - 1890740
Alignment:
| Q |
14 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
85 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
1890811 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
1890740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 1911117 - 1910967
Alignment:
| Q |
14 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
113 |
Q |
| |
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||||||| |||| ||| |||| |||||||||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| |
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| T |
1911117 |
aagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcac |
1911018 |
T |
|
| Q |
114 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
164 |
Q |
| |
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|| ||| |||| ||||||||| |||||||||||||||||||| ||||| |
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|
| T |
1911017 |
agcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgtttct |
1910967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 1902072 - 1901922
Alignment:
| Q |
14 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
113 |
Q |
| |
|
||||||| |||| ||| |||| ||||||||||||||||||||| | |||||| | ||| ||| |||||||| ||| ||||||||| | |||||| |
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|
| T |
1902072 |
aagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcac |
1901973 |
T |
|
| Q |
114 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
164 |
Q |
| |
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|||| ||| | || ||||||||||| ||||||||||||||||| ||||| |
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| T |
1901972 |
cacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 1895653 - 1895509
Alignment:
| Q |
22 |
gcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattg |
121 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||| | ||| | | | ||||| | ||||| |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
122 |
gtagaaaatccatgtaaaaggaccatcttcttgtcatctttctat |
166 |
Q |
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| | || |||||||||||||||||||||||||||||| ||||||| |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
108 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
164 |
Q |
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|
|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
108 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
161 |
Q |
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|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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