View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_56 (Length: 250)
Name: NF3992_low_56
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_56 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 44466042 - 44466247
Alignment:
| Q |
45 |
gttcaaaatcgtacatggttgtctcatgtttgagccttaaagtgtctcgtatttgcgccattgagggttttgttttgaaaatttcatataagannnnnnn |
144 |
Q |
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| T |
44466042 |
gttcaaaatcgtacatggttgtcacatgtttgggccttaaagtgtctcgtgtttgcgccattgagggttttgttttgagaatttcatataagattttttt |
44466141 |
T |
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| Q |
145 |
nccaacctccatttttctcgtgccatctaaaatctttattttacagattttataattcgaaacataaaaagcaaacaaatctaatatcattttctaattc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44466142 |
tccaacctccatttttctcgtgccatctaaaatctttattttacagattttataattcgaaacataaaaagcaaacaaatctaatatcattttctaattc |
44466241 |
T |
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| Q |
245 |
aatagc |
250 |
Q |
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|||||| |
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| T |
44466242 |
aatagc |
44466247 |
T |
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