View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_low_59 (Length: 245)
Name: NF3992_low_59
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 4533542 - 4533707
Alignment:
| Q |
64 |
gtccttaaaagaaattactgttttctatcccccataatattttctagttttaacccaaattctaaacatattagaatatattcaagatatgttggagagc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4533542 |
gtccttaaaagaaattactgttttctatcccccataatattttctagttttaacccaaattctaaacatattagaatatattcaagatatgttggagagc |
4533641 |
T |
|
| Q |
164 |
cttttatcgggtgactcgattcacgttccataaatctaaacataggtatgaaaagggggtgttaag |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||| |||||||| ||||||||||||| |
|
|
| T |
4533642 |
cttttatcggatgactcgattcacgttccataaatcaagacatgggtatgaagagggggtgttaag |
4533707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4533489 - 4533526
Alignment:
| Q |
1 |
taatccaaacggatcctaggtccttatagaagtgttta |
38 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
4533489 |
taatccaaacggaccctagatccttatagaagtgttta |
4533526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University