View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_61 (Length: 243)
Name: NF3992_low_61
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37844396 - 37844169
Alignment:
| Q |
1 |
caatcaaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgt |
100 |
Q |
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| T |
37844396 |
caatcaaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgt |
37844297 |
T |
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| Q |
101 |
tcaagggctcgataggtgttgatgtctaacatcgacagaactttgatatatgtggttacatacaatcattttcactttcttaaattatttcttgtgttta |
200 |
Q |
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| T |
37844296 |
tcaagggctcgataggtgttgatgtctaacatcgacagaacttcgatacatgtggttacatacaatcattttcactttcttaaattatttcttgtgttta |
37844197 |
T |
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| Q |
201 |
catgtcggtattggtgcatgtatattgt |
228 |
Q |
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| T |
37844196 |
catgtcggtatcggtgcatgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
150 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
210 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
150 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
206 |
Q |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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