View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_low_63 (Length: 241)
Name: NF3992_low_63
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 12356299 - 12356361
Alignment:
| Q |
73 |
caagcttgaaaagaagaaggaaacaatggccaaagattacaaggatcaaacgccagttccatt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12356299 |
caagcttgaaaagaagaaggaaacaatggctaaagattacaaggatcaaacgccagttccatt |
12356361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 12356205 - 12356247
Alignment:
| Q |
2 |
gtgttgcttggatcacacctaactttatcttgcagatatatat |
44 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12356205 |
gtgttgcttggatcacacataactttatcttgcagatatatat |
12356247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 19413536 - 19413580
Alignment:
| Q |
134 |
ttcactacaacaattatgatcaaatgcaacaccactttgaaagga |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
19413536 |
ttcactacaacaattatgatgtaatgcaactccattttgaaagga |
19413580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University