View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_64 (Length: 241)
Name: NF3992_low_64
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2532752 - 2532545
Alignment:
| Q |
18 |
atacatatattataggtagtattgaatatgtttattaataaagatgaaactttaaaatccatatatttctttacgaagtataaacatatttttaatcttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2532752 |
atacatatattataggtagtattgaatatgtttattaataaagatgaaactttaaaatccatat--ttctttacgaagtataaacatatttttaatcttg |
2532655 |
T |
|
| Q |
118 |
ttagatatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttc |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2532654 |
ttacatatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttc |
2532555 |
T |
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| Q |
218 |
cgtttttacc |
227 |
Q |
| |
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|||||||||| |
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| T |
2532554 |
cgtttttacc |
2532545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2542330 - 2542126
Alignment:
| Q |
18 |
atacatatattataggtagtattgaatatgtttattaataaagatgaaactttaaaatccatatatttctttacgaagtataaacatatttttaatcttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||| |
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| T |
2542330 |
atacatatattataggtagtattgaatatgtttattaataaaaatgaaactttaaaatccatattttt---tacaaagtataaacatattt--aatcttg |
2542236 |
T |
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| Q |
118 |
ttagatatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |
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| T |
2542235 |
ttagatatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaattccgcacatgaatattagaaactttatcctcagatc |
2542136 |
T |
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| Q |
218 |
cgtttttacc |
227 |
Q |
| |
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| |||||||| |
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| T |
2542135 |
cctttttacc |
2542126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 1830896 - 1830792
Alignment:
| Q |
123 |
tatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttccgttt |
222 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||| ||| ||||||| ||| | ||||| ||| |
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| T |
1830896 |
tatactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttcttttt |
1830797 |
T |
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| Q |
223 |
ttacc |
227 |
Q |
| |
|
||||| |
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|
| T |
1830796 |
ttacc |
1830792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 1865339 - 1865235
Alignment:
| Q |
123 |
tatactcacaggaattgtcttgattcgtgctccattttgagtttcattgaatgtgcaatttcgcacatgaatatcagaaactttatcctcagttccgttt |
222 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||| ||| ||||||| ||| | ||||| ||| |
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| T |
1865339 |
tatactcaccggaactgtcttgattcgtgctccattttgagtctccttgaatgtgcaatttctcacatgaacatcggaaacttgatcattagttcttttt |
1865240 |
T |
|
| Q |
223 |
ttacc |
227 |
Q |
| |
|
||||| |
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|
| T |
1865239 |
ttacc |
1865235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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