View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_65 (Length: 238)
Name: NF3992_low_65
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_65 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 14621686 - 14621908
Alignment:
| Q |
18 |
tactgcacctctaatttcttcttata--tatatcccaataaaaacttgccactacatctatccttaactaatttttcaaaaccttcccatggcttcaatt |
115 |
Q |
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| T |
14621686 |
tactgcacctctcatttcttcttatatatatatcccaataaaaacttgccactacatctatccttaactaatttatcaaaaccttcccatggcttcaatt |
14621785 |
T |
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| Q |
116 |
gttaatcatgagaatgagaacaaaaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagcca |
215 |
Q |
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| T |
14621786 |
gttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagcca |
14621885 |
T |
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| Q |
216 |
aaattcttgctcaaaatagtcac |
238 |
Q |
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| T |
14621886 |
aaattcttgctcaaaatggtcac |
14621908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 14588029 - 14588250
Alignment:
| Q |
18 |
tactgcacctctaatttcttcttatatatatcccaataaaaac-ttgccactacatctatccttaactaatttttcaaaaccttcccatggcttcaattg |
116 |
Q |
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|||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588029 |
tactacacctctcatttcttcttatatatatcccagtaaaaaccttgccactacatctatccttaactaatttttcaaaaccttcccatggcttcaattg |
14588128 |
T |
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| Q |
117 |
ttaatcatgagaatgagaacaaaaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaa |
216 |
Q |
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| T |
14588129 |
ttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaa |
14588228 |
T |
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| Q |
217 |
aattcttgctcaaaatagtcac |
238 |
Q |
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| T |
14588229 |
aattcttgctcaaaatggtcac |
14588250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 12845698 - 12845777
Alignment:
| Q |
152 |
cttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaaaattcttgctcaaaa |
231 |
Q |
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| T |
12845698 |
cttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaa |
12845777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 51370712 - 51370626
Alignment:
| Q |
152 |
cttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaaaattcttgctcaaaatagtcac |
238 |
Q |
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| T |
51370712 |
cttcatgttgcaatgctcccatggcttgctatgggacacgtactcccttattttgagttggccaaaattcttgctcaaaatggtcac |
51370626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 29953655 - 29953827
Alignment:
| Q |
60 |
cttgccactacatctatccttaactaatttttcaaaaccttcccatggcttcaattgttaatcatgagaatgagaacaaaaatgtcaagtcccttcatgt |
159 |
Q |
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|||||||||||||| |||| || || || || ||| | || |||||| |||||||||||| |||||||||||||| | |||| | |||||||| |
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| T |
29953655 |
cttgccactacatccatccatagctctttctttaaaccgtttccatggattcaattgttaagcatgagaatgagaa------ttgcaagcctcttcatgt |
29953748 |
T |
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| Q |
160 |
tgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaaaattcttgctcaaaatagtcac |
238 |
Q |
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| T |
29953749 |
cgtaatgctcccttgactcgctatgggacacatatacccttatttcgagttggccaagattcttgctcaaaatcgtcac |
29953827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 20491833 - 20491955
Alignment:
| Q |
103 |
catggcttcaattgttaatcatgagaatgagaacaaaaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacctttt |
202 |
Q |
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||||| |||||||||||||||||| |||| ||||| |||| | ||||||||||||||| | || |||||||||||||||||||| |||| | |
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| T |
20491833 |
catggattcaattgttaatcatgaaaatggtaacaa------caagcctcttcatgttgtaatgatcccttggctagctatgggacacatgtacccttat |
20491926 |
T |
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| Q |
203 |
ttcgagttagccaaaattcttgctcaaaa |
231 |
Q |
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| T |
20491927 |
ttcgagttagcaaaaattcttgctcaaaa |
20491955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 11529654 - 11529785
Alignment:
| Q |
100 |
tcccatggcttcaattgttaatcatgagaatgagaacaaaaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacct |
199 |
Q |
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|||||||| ||||||| |||| ||| |||||||||| | ||| |||| | |||||||||| |||| | || ||||||||||||||||||||| ||| |
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| T |
11529654 |
tcccatggattcaattattaaccataagaatgagaatgagaatagcaagcctcttcatgttgcaatgctcccttggctagctatgggacacatataccct |
11529753 |
T |
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| Q |
200 |
tttttcgagttagccaaaattcttgctcaaaa |
231 |
Q |
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| T |
11529754 |
tattttgaattggccaaaattcttgctcaaaa |
11529785 |
T |
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