View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_low_68 (Length: 230)

Name: NF3992_low_68

Description: NF3992

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3992_low_68

[»] chr8 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 193; E-Value: 1e-105

Query Start/End: Original strand, 16 - 212

Target Start/End: Complemental strand, 11747291 - 11747095

Alignment:

Q	16	gcacagacatcagatacaacattaacattgacactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaaatatcacatgtgttcgtg	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11747291	gcacagacatcagatacaacattaacattgacactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaaatatcacatgtgttcgtg	11747192	T

Q	116	tcgtttcggtgtctaacaaagacatgtatctgacattgaacacgtatcaaacatggttcatctactgagggtcctaaaggtatttcaccacatgtga	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11747191	tcgtttcggtgtctaacaaagacatgcatctgacattgaacacgtatcaaacatggttcatctactgagggtcctaaaggtatttcaccacatgtga	11747095	T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 46 - 97

Target Start/End: Complemental strand, 29219725 - 29219674

Alignment:

Q	46	acactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaa	97	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	29219725	acactgacatgtaaacgtcagtaataatttaagaaaatggaagtaattgaaa	29219674	T

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