View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_low_8 (Length: 537)
Name: NF3992_low_8
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 28752672 - 28752161
Alignment:
| Q |
17 |
agaatccaatggaaatctcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752672 |
agaatccaatggaaatctcggatcagaaccttccaactatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggat |
28752573 |
T |
|
| Q |
117 |
tcggttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagag |
216 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28752572 |
tcagttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgtgctagag |
28752473 |
T |
|
| Q |
217 |
ttgttttcaaaagacgctgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggatttt |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752472 |
ttgttttcaaaagacgctgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggatttt |
28752373 |
T |
|
| Q |
317 |
gccccgtacaccaaagaaaggaacaggaaagcgaggcagnnnnnnnnnnnnnnnnnnnngttctgtggatgcccccgcagtttgatgccttgacaattag |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28752372 |
gccccgtacaccaaagaaaggaacaggaaagcgaggcagaaaaagcaaaaaagaaaaaagttctgtggatgcccccacagtttgatgccttgacaattag |
28752273 |
T |
|
| Q |
417 |
tggtaag-tttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttggctagcatgctaatcaatagaattgagtagctca |
515 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752272 |
tggtaagttttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttggctagcatgctaatcaatagaattgagtagctca |
28752173 |
T |
|
| Q |
516 |
ctaattgatgat |
527 |
Q |
| |
|
|||||||||||| |
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| T |
28752172 |
ctaattgatgat |
28752161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 255
Target Start/End: Complemental strand, 28749641 - 28749488
Alignment:
| Q |
102 |
tttacaaacttggattcggttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagagga |
201 |
Q |
| |
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||||||||||| ||||| ||| ||||||| || ||| ||||| || ||| | | |||||| || ||| |||||| |||||||| || ||| || || |
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| T |
28749641 |
tttacaaacttcgattccattcgttcaacaacgtttcttaacaatattttttgtcactttggacccctaattgaatggaagactgaactgctaccgaaga |
28749542 |
T |
|
| Q |
202 |
ctaaccgcgctagagttgttttcaaaagacgctgtgatgcagaaactgctttta |
255 |
Q |
| |
|
|||| || | |||||||||||| ||||||| ||| ||||||||||||| |||| |
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|
| T |
28749541 |
ctaaaggcaccagagttgttttccaaagacgttgtaatgcagaaactgcattta |
28749488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 529
Target Start/End: Original strand, 44866081 - 44866599
Alignment:
| Q |
17 |
agaatccaatggaaatctcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggat |
116 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
44866081 |
agaaaccaatggaaatcttggatcagaaccttccaaccatgtggaacatgtgaacgatagttctccaacttctcttactctgaaatttacaaacttggat |
44866180 |
T |
|
| Q |
117 |
tcggttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagag |
216 |
Q |
| |
|
|| |||||| ||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||| | ||||| |||| |||||||||||| | || |
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|
| T |
44866181 |
tcagttcctacaacaacggatctcaacaagatctttggccgctttgggacactaattgaatcaaagactaaacttctcgagaagactaaccgcgccaaag |
44866280 |
T |
|
| Q |
217 |
ttgttttcaaaagacgctgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggatttt |
316 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
44866281 |
ttgtttttgaacgatattgtgatgcagaaactgcttttagcagtgctggaaagtatagcatatttggaccttcattacaaagttaccgcctcaagatttt |
44866380 |
T |
|
| Q |
317 |
gccccgtacaccaaagaaaggaacaggaaagcgaggcagnnnnnnnnnnnnnnnnnnnngttctgtg------gatgcccccgcagtttgatgccttgac |
410 |
Q |
| |
|
||| ||||||||| ||||| | |||||||||||||| || |||||||| |||||| || ||||||||||||||||| |
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|
| T |
44866381 |
gcctcgtacaccagagaaaagcacaggaaagcgaggtagaaaaagcaaaaaagaaaaaagttctgtggatgccgatgccgccacagtttgatgccttgac |
44866480 |
T |
|
| Q |
411 |
aattagtggtaagtttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttggctagcatgctaatcaatagaattgagta |
510 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||||||| | | | ||||| |||| |||||| ||| ||||||||| |
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|
| T |
44866481 |
aattagtggtgagtttatgtgaacatcgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatacataaaattgagta |
44866580 |
T |
|
| Q |
511 |
gctcactaattgatgatgt |
529 |
Q |
| |
|
||||||||||||| ||||| |
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| T |
44866581 |
gctcactaattgacgatgt |
44866599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 399 - 527
Target Start/End: Complemental strand, 45246993 - 45246864
Alignment:
| Q |
399 |
tgatgccttgacaattagtggtaagtttatgtgaatat-cgatcgacactcttagttttagtattttgatgagttactaacttggctagcatgctaatca |
497 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| | ||||||| |||||||||||||| ||||||||||| ||| || |||||||| ||||| |
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|
| T |
45246993 |
tgatgccttgacagttagtggtgagtttatgtgaatattcaatcgacagtcttagttttagtactttgatgagtttttaattttgctagcatcctaatac |
45246894 |
T |
|
| Q |
498 |
atagaattgagtagctcactaattgatgat |
527 |
Q |
| |
|
||||||| ||||| || ||| |||||||| |
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|
| T |
45246893 |
atagaatggagtaacttacttgttgatgat |
45246864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 355
Target Start/End: Complemental strand, 19714247 - 19714015
Alignment:
| Q |
120 |
gttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagagttg |
219 |
Q |
| |
|
|||||||||||||| |||||||||| | || || ||||||| || || |||||||||||||||| | |||| || |||||| ||| ||||||| |
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|
| T |
19714247 |
gttccttcaacagctattctcaacaagcttttatgctgctttggtcccttaattgaatcaaagactgaattgctagcgaagactaatagcgtcagagttg |
19714148 |
T |
|
| Q |
220 |
ttttcaaaagacgctgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgcc |
319 |
Q |
| |
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||||| | | ||| |||||||||||||||||||||| | | ||||||||| | |||||| || |||||||||| | | |||| | ||||||| |
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|
| T |
19714147 |
ttttcgagaaacgttgtgatgcagaaactgcttttactcatatcggaaagtatcg---ttttggatctgcactacaaagctttcatctcaaggttttgcc |
19714051 |
T |
|
| Q |
320 |
ccgtacaccaaagaaaggaacaggaaagcgaggcag |
355 |
Q |
| |
|
| || ||||||||||||||| |||||||||||||| |
|
|
| T |
19714050 |
tcataaaccaaagaaaggaaccggaaagcgaggcag |
19714015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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