View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_high_12 (Length: 250)
Name: NF3993_high_12
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 51858571 - 51858803
Alignment:
| Q |
1 |
cgataagagtggaattattttctggatcaattgttcatcctttaagttggttcagtcttcaccctccttaaataatgatggtagcaagaagcgtttggtg |
100 |
Q |
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| T |
51858571 |
cgataagagtggaattattttctggatcaattgttcatccattaagttggttcggtcttcaccctccttaaataatgatggtagcaagaagcgtttggtg |
51858670 |
T |
|
| Q |
101 |
gaggcgcgtggaagtctttttgtggttgaaatgtattttagaagaactgctatgaatacatgcaaattagtcatggatataagtgttttgaagattgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51858671 |
gaggcgcgtggaagtctttttgtggttgaaatgtatttcagaagaactgctatgaatacatgcaaattagtcatggatatcagtgttttgaagattgatg |
51858770 |
T |
|
| Q |
201 |
aagaatcaagtggatggcttcgtgtaacatact |
233 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
51858771 |
aagaatcaagtagatggcttcgtgtaacatact |
51858803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 34864917 - 34864690
Alignment:
| Q |
2 |
gataagagtggaattattttctggatcaattgttcatcctttaagttggttcagtcttcaccctccttaaataatgatggtagcaagaagcgtttggtgg |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
34864917 |
gataaaagtggaattattttctggatcaattgttcatcctttaagttggttcaatgttcaccctccttaagtaatgatcgtagcaagaagtgtttggtgg |
34864818 |
T |
|
| Q |
102 |
aggcgcgtggaagtctttttgtggttgaaatgtattttagaagaactgctatgaatacatgcaaattagtcatggatataagtgttttgaagattgatga |
201 |
Q |
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| | | ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||| || |||||| |
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| T |
34864817 |
actcacatggaagtctttttgtggttgaaatgtattctagaagaactggcgtgaatacctgcaaattactcatggatatcagtgttttaaacgttgatgg |
34864718 |
T |
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| Q |
202 |
agaatcaagtggatggcttcgtgtaaca |
229 |
Q |
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| T |
34864717 |
agaatcaagtagatggcttcgtgtaaca |
34864690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 34145703 - 34145795
Alignment:
| Q |
10 |
tggaattattttctggatcaattgttcatcctttaagttggttcagtcttcaccctccttaaataatgatggtagcaagaagcgtttggtgga |
102 |
Q |
| |
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|||||||||||| |||| |||||||||||||||| |||||||||||| ||||| | ||||||| || ||||| |||||| ||||||||| |
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| T |
34145703 |
tggaattatttttcggattaattgttcatcctttacgttggttcagtcgtcaccaccattaaatagtggtggtaaaaagaagtatttggtgga |
34145795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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