View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_high_14 (Length: 225)
Name: NF3993_high_14
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 36956268 - 36956472
Alignment:
| Q |
1 |
ttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttact |
100 |
Q |
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||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
36956268 |
ttttactctcaaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaacttaat |
36956367 |
T |
|
| Q |
101 |
tggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956368 |
tggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagcaagc |
36956467 |
T |
|
| Q |
201 |
cattg |
205 |
Q |
| |
|
||||| |
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| T |
36956468 |
cattg |
36956472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 36935419 - 36935611
Alignment:
| Q |
6 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
105 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||| | |||| |
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| T |
36935419 |
ctctcaaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtgaactacgtcggtt |
36935518 |
T |
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| Q |
106 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaa |
198 |
Q |
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| | |||||||||||||||||||| || |||||||| || ||||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
36935519 |
gtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaactagcaa |
36935611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 36948197 - 36948388
Alignment:
| Q |
6 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
105 |
Q |
| |
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|||| ||||| |||||||| | ||||||||||||||||| ||| | ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
36948197 |
ctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggtt |
36948296 |
T |
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| Q |
106 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagca |
197 |
Q |
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|||||||||||||||||||||| | | |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
36948297 |
ggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagca |
36948388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 37079522 - 37079377
Alignment:
| Q |
6 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
105 |
Q |
| |
|
|||| ||||| || ||||| || ||||||||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| |
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| T |
37079522 |
ctctgaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaacttacttggtt |
37079423 |
T |
|
| Q |
106 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtg |
151 |
Q |
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||||||||||||||||||| | ||| |||||| |||| ||||||| |
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| T |
37079422 |
ggcaaatgtgtttctggttgtagcttcaattttggttgtggttgtg |
37079377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 37069757 - 37069660
Alignment:
| Q |
11 |
aaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggc |
108 |
Q |
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|||||||| |||| || ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
37069757 |
aaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaacttacttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 12493556 - 12493352
Alignment:
| Q |
1 |
ttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttact |
100 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||||||||| |
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| T |
12493556 |
ttttactctcaaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttact |
12493457 |
T |
|
| Q |
101 |
tggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagc |
200 |
Q |
| |
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|||||| ||||||||| |||||||||||| | |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
12493456 |
tggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaagc |
12493357 |
T |
|
| Q |
201 |
cattg |
205 |
Q |
| |
|
||||| |
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|
| T |
12493356 |
cattg |
12493352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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