View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_high_3 (Length: 370)
Name: NF3993_high_3
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 19751243 - 19751592
Alignment:
| Q |
1 |
aagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgttacatttcatctatatttagaagtcattgttctaactagctattagatctt |
100 |
Q |
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| T |
19751243 |
aagaaatctgagaaaatgaaaactgtttatcgaattgtgtcgagtttgttacatttcatctatatatagaagtcattgttctaactagctattagatctt |
19751342 |
T |
|
| Q |
101 |
cctaccaattaacagctggcactaactactatatggttagattactcactttatgtacgatacactatagtaatagtgtagcttaatgctcaagttaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
19751343 |
cctaccaattaacagctggcactaactactatatggttagattactcactctatgtaccatacactatagtaatagtgtagc-taaagctcaagttaact |
19751441 |
T |
|
| Q |
201 |
aataccgagttacagttttgcaggtttaacaccaatcaccacaaaattcaaagtaattcctcaacctcccacaaaacagaacctgaaaccatatccctcg |
300 |
Q |
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| T |
19751442 |
aataccgagttacagttttgcaggtttaacaacaatcaccacaaaattcaaagtaattcctcaacctcctacaaaacagaacctgaaaccatatccctcg |
19751541 |
T |
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| Q |
301 |
ttgacaaacatggtgagaattcactgctatacatgaaaaaatatcccaacc |
351 |
Q |
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| T |
19751542 |
ttgacaaacatggtgagaattcactgctatgcatgaaaaaatatcccaacc |
19751592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1820282 - 1820390
Alignment:
| Q |
1 |
aagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgttacatttcatctatatttagaagtcattgttctaactagctattagatctt |
100 |
Q |
| |
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||||||||| ||| ||| |||| ||||||||||||||||| ||||||||||| || |||||||| ||||| || |||||||||| | ||||||||| |
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| T |
1820282 |
aagaaatctcagaaaattaaaa-tgtttatcgaattgtgttgagtttgttacggttgatctatatatagaacctatagttctaactaac--ttagatctt |
1820378 |
T |
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| Q |
101 |
cctaccaattaa |
112 |
Q |
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| T |
1820379 |
ccaaccaattaa |
1820390 |
T |
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