View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_high_4 (Length: 355)
Name: NF3993_high_4
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 36168 - 35823
Alignment:
| Q |
10 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctgtgaggttaacttttacatcagttacggtacaaacac |
109 |
Q |
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| T |
36168 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctttgaggttaacttttacatcagttacggtacaaacac |
36069 |
T |
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| Q |
110 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
209 |
Q |
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| T |
36068 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
35969 |
T |
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| Q |
210 |
caattttgatatctgtgaacatgcataatgtgagattgaacaactaaaaagtagaagcggagttaagacataaatatatgaatatcatctatatattagg |
309 |
Q |
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| T |
35968 |
caattttgatatctgtgaacatgcataatgtgagattgaacaactaaaaagtagaagcggagtgaagacataaatatatgaatatcatctatatattagg |
35869 |
T |
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| Q |
310 |
agacacattaaaagtgagtgatagagatgaacatacgagtttgaaa |
355 |
Q |
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| T |
35868 |
agacacattaaaagtgagtgatagagatgaacatacgagtttgaaa |
35823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 8676538 - 8676696
Alignment:
| Q |
67 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
166 |
Q |
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| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
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| Q |
167 |
tgtgaagaatcctttccataacacaaaccacgggaatcatactcaattttgatatctgt |
225 |
Q |
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| T |
8676638 |
tgtgaaggatccattccatcacacaaaccaccggaatcatgcttagttttgatatctgt |
8676696 |
T |
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