View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3993_high_9 (Length: 263)

Name: NF3993_high_9
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3993_high_9
NF3993_high_9
[»] chr1 (18 HSPs)
chr1 (19-257)||(9085843-9086078)
chr1 (18-257)||(9069546-9069782)
chr1 (18-257)||(9125014-9125250)
chr1 (28-257)||(8861449-8861672)
chr1 (96-249)||(8978911-8979064)
chr1 (102-243)||(9236124-9236265)
chr1 (102-227)||(9377984-9378109)
chr1 (102-222)||(9300365-9300485)
chr1 (102-206)||(8927238-8927342)
chr1 (167-242)||(9106248-9106321)
chr1 (102-206)||(8939664-8939768)
chr1 (102-248)||(9337783-9337929)
chr1 (102-239)||(9364651-9364788)
chr1 (100-161)||(9495610-9495671)
chr1 (127-244)||(10930800-10930917)
chr1 (102-206)||(9242256-9242360)
chr1 (102-162)||(9466450-9466510)
chr1 (127-244)||(11041163-11041280)
[»] scaffold0690 (1 HSPs)
scaffold0690 (102-206)||(1893-1997)
[»] chr6 (5 HSPs)
chr6 (102-206)||(15910109-15910213)
chr6 (106-161)||(31229945-31230000)
chr6 (106-158)||(31145371-31145423)
chr6 (106-158)||(31171684-31171736)
chr6 (106-158)||(31189429-31189481)
[»] chr3 (1 HSPs)
chr3 (132-224)||(9171772-9171864)
[»] chr7 (1 HSPs)
chr7 (102-170)||(31541037-31541105)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 9085843 - 9086078
Alignment:
Q  19 atatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctacattcttccttccaccaa 118  Q
    |||| ||||||||||||||| ||||||| |||||||||| |||||| | |||||||||||||||||||||   |||||||||||||||||||||||||||    
T  9085843 atatatatgtctccttccaataaattataaatccattctcggtataaactatggaaagtttctgcagatg---atgagtctacattcttccttccaccaa 9085939  T
Q  119 ccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9085940 ccatctctagcaacaacatcccataactataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggt 9086039  T
Q  219 tcctctagcagctgtcatggacactacactaatattctt 257  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  9086040 tcccctagcagctgtcatggacactacactaatattctt 9086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 9069546 - 9069782
Alignment:
Q  18 tatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctacattcttccttccacca 117  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||| || ||| |||  |||||||||||| ||    ||||||||||| ||||| |||    
T  9069546 tatatgtatgtctccttccaataagttatgaatccattccgggtataaaacatgcaaatcttctgcagatgacgaa---tctacattctttcttcctcca 9069642  T
Q  118 accatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaagg 217  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||||||||    
T  9069643 accatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggtgccatatatcccaagg 9069742  T
Q  218 ttcctctagcagctgtcatggacactacactaatattctt 257  Q
    |||| |||||||||||||||||||||| ||||| ||||||    
T  9069743 ttcccctagcagctgtcatggacactatactaagattctt 9069782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 9125014 - 9125250
Alignment:
Q  18 tatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctacattcttccttccacca 117  Q
    ||||||| | ||||||||||| |  ||||||||||||||||| |||| || ||||||| ||||  ||||  | ||    ||||||||||| | ||| |||    
T  9125014 tatatgtgtatctccttccaataggttatgaatccattctggatataaaacatggaaattttcatcagacaaggaa---tctacattcttgcgtcctcca 9125110  T
Q  118 accatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaagg 217  Q
    ||||  || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9125111 accaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaagg 9125210  T
Q  218 ttcctctagcagctgtcatggacactacactaatattctt 257  Q
    |||||||||| || |||||||| || ||||||| ||||||    
T  9125211 ttcctctagccgcagtcatggatacaacactaacattctt 9125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 8861449 - 8861672
Alignment:
Q  28 tctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctacattcttccttccaccaaccatctcta 127  Q
    ||||||||||| || ||||| ||||||||||||||||| | ||| |||||||||||||| |       |||||||||||| || || |||||||| ||||    
T  8861449 tctccttccaataagttatggatccattctgggtatagcacatgaaaagtttctgcagacgt------gtctacattctttctccctccaaccatttcta 8861542  T
Q  128 gcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctagc 227  Q
    |||||||||| || ||||| |||||||| ||||||||||| ||||| |||||||||| ||| | ||||||||||||||| ||||||||||||||  ||||    
T  8861543 gcaacaacattccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagc 8861642  T
Q  228 agctgtcatggacactacactaatattctt 257  Q
    ||||||||||||||| || |||| ||||||    
T  8861643 agctgtcatggacacaacgctaagattctt 8861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 8978911 - 8979064
Alignment:
Q  96 gtctacattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaact 195  Q
    ||||| ||||||||||||  ||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||| ||||| ||||    
T  8978911 gtctatattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaact 8979010  T
Q  196 tcaggcgccatatatcccaaggttcctctagcagctgtcatggacactacacta 249  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||||||    
T  8979011 tcaggtgccatatatcccaaggtacccctagccgctgtcatggacactacacta 8979064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 9236124 - 9236265
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||||  |||||||||||| || ||||  || |||||||||||     
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  202 gccatatatcccaaggttcctctagcagctgtcatggacact 243  Q
    || || ||||||||||||||||| || || ||||| ||||||    
T  9236224 gcaatgtatcccaaggttcctctcgctgcagtcatagacact 9236265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 9378109 - 9377984
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| || || |||||||||||||||||||| || || || |||||||||||||||||   |||||||||||| || |||| ||| |||||||||||     
T  9378109 attctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggt 9378010  T
Q  202 gccatatatcccaaggttcctctagc 227  Q
    || || || ||||| |||||||||||    
T  9378009 gcaatgtagcccaatgttcctctagc 9377984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 9300485 - 9300365
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| ||||  || |||||||| ||     
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  202 gccatatatcccaaggttcct 222  Q
    ||||| ||||| || ||||||    
T  9300385 gccatgtatcctaatgttcct 9300365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 8927342 - 8927238
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| ||||||||||||||||||||||| || || || || ||||||||||||  ||| ||||| ||||| ||||| || |||||||||||     
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  202 gccat 206  Q
    |||||    
T  8927242 gccat 8927238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 9106248 - 9106321
Alignment:
Q  167 aaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctagcagctgtcatggacac 242  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||||||||| |||||||| | || ||||||||    
T  9106248 aaacatttccaaaattttgtgacaa--cttctggcgccatatatcccaaggtttctctagcatcggtaatggacac 9106321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 8939768 - 8939664
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| ||||||||||| |||| |||||| || || || || ||||||||||||  ||| ||||| ||||| ||||| || |||||||||||     
T  8939768 attctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8939669  T
Q  202 gccat 206  Q
    |||||    
T  8939668 gccat 8939664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 9337929 - 9337783
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| |||||||| || | ||| ||||| || ||||| || ||||||||||||  ||| ||||| ||||| |||| ||| |||||||||||     
T  9337929 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9337830  T
Q  202 gccatatatcccaaggttcctctagcagctgtcatggacactacact 248  Q
    ||||| || || || |||||  |||| || |||||||| || |||||    
T  9337829 gccatgtagcctaatgttcccttagctgcagtcatggatacgacact 9337783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 9364788 - 9364651
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| |||||||| || | ||| ||||| || ||||| || ||||||||||||  ||| ||||| ||||| |||| ||| |||||||||||     
T  9364788 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9364689  T
Q  202 gccatatatcccaaggttcctctagcagctgtcatgga 239  Q
    ||||| || || || |||||  |||| || ||||||||    
T  9364688 gccatgtagcctaatgttcccttagctgcagtcatgga 9364651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 9495671 - 9495610
Alignment:
Q  100 acattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactt 161  Q
    |||||||  ||||| || |||||||||||||||||||| ||| ||||||||| |||||||||    
T  9495671 acattctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagactt 9495610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 10930917 - 10930800
Alignment:
Q  127 agcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctag 226  Q
    ||||||| ||| ||||||||||||| ||| || ||   ||| ||||||||||| || | ||| |||||||| || || || || ||||| ||||||||||    
T  10930917 agcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagttcctctag 10930818  T
Q  227 cagctgtcatggacacta 244  Q
    | |||||||| |||||||    
T  10930817 ctgctgtcattgacacta 10930800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 9242256 - 9242360
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || | ||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  202 gccat 206  Q
    |||||    
T  9242356 gccat 9242360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 9466450 - 9466510
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactta 162  Q
    |||||| |||||  |||||||||| | ||||||||| ||||||||||| ||||||||||||    
T  9466450 attctttcttcctgcaaccatctccaacaacaacataccataactatatatatcagactta 9466510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 11041280 - 11041163
Alignment:
Q  127 agcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctag 226  Q
    ||||||| ||| ||||||||||||| ||| || || | ||| || |||||||| || | ||| |||||||| || || || || ||||| ||||||||||    
T  11041280 agcaacatcattccataactataaacatccgatttgaaagacacgtttccaaagttccttgaaaaaacttctggagcaatgtagcccaaagttcctctag 11041181  T
Q  227 cagctgtcatggacacta 244  Q
    | || ||||| |||||||    
T  11041180 ccgcggtcattgacacta 11041163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 1997 - 1893
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || ||||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  1997 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 1898  T
Q  202 gccat 206  Q
    |||||    
T  1897 gccat 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 15910109 - 15910213
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 201  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || ||||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  15910109 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 15910208  T
Q  202 gccat 206  Q
    |||||    
T  15910209 gccat 15910213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 31230000 - 31229945
Alignment:
Q  106 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactt 161  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||  ||||||||    
T  31230000 ttcctcccaccaaccatttctagcaacatcattccataactataaacgtcagactt 31229945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 31145371 - 31145423
Alignment:
Q  106 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 158  Q
    ||||| || |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  31145371 ttcctccctccaaccatttctagcaacatcattccataactataaacatcaga 31145423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 31171684 - 31171736
Alignment:
Q  106 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 158  Q
    ||||| || |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  31171684 ttcctccctccaaccatttctagcaacatcattccataactataaacatcaga 31171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 31189429 - 31189481
Alignment:
Q  106 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 158  Q
    ||||| ||||||||||| || ||||||| ||| ||||||||||||| ||||||    
T  31189429 ttcctcccaccaaccatttccagcaacatcattccataactataaacatcaga 31189481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 9171864 - 9171772
Alignment:
Q  132 caacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctct 224  Q
    |||||| ||||| ||||| ||||||||||||  ||| ||||| ||||||||||  || |||||||| || ||||| ||||| || ||||||||    
T  9171864 caacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctct 9171772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 31541037 - 31541105
Alignment:
Q  102 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaac 170  Q
    |||||| ||||| |||||||| ||||| |  ||||| ||||||||||| | |||||||||| |||||||    
T  31541037 attctttcttcccccaaccatttctagaattaacataccataactatatacatcagacttatgagaaac 31541105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University