View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_low_1 (Length: 550)
Name: NF3993_low_1
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 7626277 - 7626798
Alignment:
| Q |
13 |
aatatcaattattgatgtcaacgttaaagtggtatatatatagatgagattaacatttaaggtgcgtacaaaagtatatttactgatttggcaatatatg |
112 |
Q |
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| T |
7626277 |
aatatcaattattgatgtcaacgttaaagtggtatatatatagatgagattaacatttaaggtgcgtacaaaagtatatttactgatttggcaatatatg |
7626376 |
T |
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| Q |
113 |
catgcttgaaccgtgaatagcgccggatcatgaaatttttgtcaggttatatttgccatttatatagctagcttccatgttaggctaactttcactttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7626377 |
catgcttgaaccgtgaatagcgccggatcatgaaatttttgtcaggttatatttgccatttatatagctagcttccatgttaggctaactttcactttct |
7626476 |
T |
|
| Q |
213 |
aatcttctttgtattccttttgatgctccttcgtcctctcaatatctatggtctacatagacgcacgtttgtgtaaggtaggtctaggactttattagga |
312 |
Q |
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| T |
7626477 |
aatcttctttgtattccttttgatgctccttcgtcctctcaatatctatggtctacatagacgcacgtttgtgtaaggtaggtctaggactttattagga |
7626576 |
T |
|
| Q |
313 |
caacactaaccgtacgtacgttctcttcaatcaaaacaaatcctaatcttggctgattcttgcttcaatcctaccacgattaaaagtgtgtcttgtatcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
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| T |
7626577 |
caacactaaccgtacgtacgttctcttcaatcaaaacaaatcctaatcttggctgatttttgcttcaatcctaccacgattgaaagtgtgtcaggtatcc |
7626676 |
T |
|
| Q |
413 |
aacacgcgttatattgattgcacgaatcatataatcataacggtaggatataattatattcaattattttcannnnnnnnaatcattgctgatgttaata |
512 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
7626677 |
aacacgcgttatattgattgcacgaatcatatgatcataacgataggatataattatattcaattattttca-tttttttaatcattgttgatgttaata |
7626775 |
T |
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| Q |
513 |
catcaatattagtgtgatatttg |
535 |
Q |
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| T |
7626776 |
catcaatattagtgtgatatttg |
7626798 |
T |
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