View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3993_low_10 (Length: 255)

Name: NF3993_low_10
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3993_low_10
NF3993_low_10
[»] chr1 (8 HSPs)
chr1 (2-255)||(9086152-9086408)
chr1 (5-255)||(9125327-9125577)
chr1 (5-255)||(9069859-9070109)
chr1 (20-247)||(8861764-8861991)
chr1 (5-247)||(8979149-8979391)
chr1 (41-244)||(9420670-9420873)
chr1 (41-244)||(9437753-9437956)
chr1 (5-61)||(9106413-9106469)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 9086152 - 9086408
Alignment:
Q  2 ttaatgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccacccca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9086152 ttaatgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgt-gcagcttctcccacccca 9086250  T
Q  102 tgaagtgatccttgttatcaggcggaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattcc----ctctgcgc 197  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  9086251 tgaagtgatccgtgttatcaggtgaaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctagctctgcgc 9086350  T
Q  198 aaaatccaagcaaccgaaccacgttgatatggtgtatttttcccataatttctacttc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9086351 aaaatccaagcaaccgaaccacgttgatatggtgtatttttcccataatttctacttc 9086408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 9125327 - 9125577
Alignment:
Q  5 atgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatga 104  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||||||||||    
T  9125327 atgtcaaagtgaagaattggatggctacaaccctcatgaagatactcaattccttttgctacaccaagactaattagttgtagcttctcccaccccatga 9125426  T
Q  105 agtgatccttgttatcaggcggaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatcc 204  Q
    | |||||||||| ||| || ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||  | ||    
T  9125427 aatgatccttgtcatccggtggaaatatgaagcattgtagcgaaccttttggaaacaaattgtatacaagagctcgatggattccatctgcgcagtagcc 9125526  T
Q  205 aagcaaccgaaccacgttgatatggtgtatttttcccataatttctacttc 255  Q
    |||||| ||||||||||| || ||||| ||| | ||||||||||| |||||    
T  9125527 aagcaagcgaaccacgttaatgtggtggattgtacccataatttccacttc 9125577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 9069859 - 9070109
Alignment:
Q  5 atgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatga 104  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||||||||||||||    
T  9069859 atgtcaaagtgaataattggatggctacagccctcatgaagatactcgattgcttttgctataccagtactaatttgttgtagcttctcccaccccatga 9069958  T
Q  105 agtgatccttgttatcaggcggaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatcc 204  Q
    | | |||||||||||| || ||||||||||||||||| || |||||||| | ||| ||||||||||| ||||| |  || | ||| ||||||||||| ||    
T  9069959 aataatccttgttatccggtggaaatatgaagctttgcagagaacctttcgaaaaaaaattgtatactagagcgcagtgaactccttctgcgcaaaagcc 9070058  T
Q  205 aagcaaccgaaccacgttgatatggtgtatttttcccataatttctacttc 255  Q
    |||||| |||||||| ||||||||||| ||||| ||||||||||| |||||    
T  9070059 aagcaaacgaaccacattgatatggtgaattttgcccataatttccacttc 9070109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 8861764 - 8861991
Alignment:
Q  20 attggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatgaagtgatccttgttat 119  Q
    ||||||||| |||||||   ||| |||||||| |||||||| || || || | || ||||||||| |||||||||||||||||||| || ||||||||||    
T  8861764 attggatggttacaaccgagatgtagatactcaattcctttggcaattcctataccaatttgttgtagcttctcccaccccatgaaatggtccttgttat 8861863  T
Q  120 caggcggaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatccaagcaaccgaaccac 219  Q
    | || |||||||||||||||||||| ||||| |||||||| |||||||| |||||||| || || ||||| |||||||| || |||||||| ||||||||    
T  8861864 ctggtggaaatatgaagctttgtagcgaaccatttggaaataaattgtagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccac 8861963  T
Q  220 gttgatatggtgtatttttcccataatt 247  Q
    |||||| ||||| ||||| |||||||||    
T  8861964 gttgatgtggtggattttgcccataatt 8861991  T

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Target: chr1; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 8979149 - 8979391
Alignment:
Q  5 atgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatga 104  Q
    |||||||| || ||||||| ||| |||||||||| |||||||||||| |||||| | || || |||| || |||||  |||||| |||||||||||||||    
T  8979149 atgtcaaaatgaaggattgaatgactacaaccctgatgaagatactcaattcctctggctatgccaataccaattttctgcagcatctcccaccccatga 8979248  T
Q  105 agtgatccttgttatcaggcggaaatatgaagctttgtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatcc 204  Q
    |||| |||| |||||| || ||||||||||| |||||||  ||||| |||| ||| |||||||| |||||| ||||||| ||||||||||| || || ||    
T  8979249 agtggtcctcgttatctggaggaaatatgaaactttgtaacgaaccctttgaaaataaattgtagacaagaacacgatgaattccctctgcacagaagcc 8979348  T
Q  205 aagcaaccgaaccacgttgatatggtgtatttttcccataatt 247  Q
    |||||| ||||| || ||||| ||||| |||||||||||||||    
T  8979349 aagcaatcgaacaacattgatgtggtggatttttcccataatt 8979391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 9420670 - 9420873
Alignment:
Q  41 tgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatgaagtgatccttgttatcaggcggaaatatgaagcttt 140  Q
    ||||||||||| || ||||| || || ||||||  ||||||||| ||||||||||| || |  || || ||| | | ||||||  |   ||||||| | |    
T  9420670 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatatcatcaggtcgggttatgaagttct 9420769  T
Q  141 gtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatccaagcaaccgaaccacgttgatatggtgtatttttcc 240  Q
    |||  ||||| |||||||| ||||| || ||||||||||| | |  ||| || ||||||||||||| ||| ||||| || ||||| || || ||||||||    
T  9420770 gtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttcc 9420869  T
Q  241 cata 244  Q
    ||||    
T  9420870 cata 9420873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 9437753 - 9437956
Alignment:
Q  41 tgaagatactcgattccttttgcgataccaagactaatttgttgcagcttctcccaccccatgaagtgatccttgttatcaggcggaaatatgaagcttt 140  Q
    ||||||||||| || ||||| || || ||||||  ||||||||| ||||||||||| || |  || || ||| | | ||||||  |   ||||||| | |    
T  9437753 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatatcatcaggtcgggttatgaagttct 9437852  T
Q  141 gtagtgaaccttttggaaacaaattgtatacaagagcacgatggattccctctgcgcaaaatccaagcaaccgaaccacgttgatatggtgtatttttcc 240  Q
    |||  ||||| |||||||| ||||| || ||||||||||| | |  ||| || ||||||||||||| ||| ||||| || ||||| || || ||||||||    
T  9437853 gtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttcc 9437952  T
Q  241 cata 244  Q
    ||||    
T  9437953 cata 9437956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 9106413 - 9106469
Alignment:
Q  5 atgtcaaagtgcaggattggatggctacaaccctcatgaagatactcgattcctttt 61  Q
    ||||||||||| || ||||||||| ||||| | || ||||||||||| |||||||||    
T  9106413 atgtcaaagtgaagaattggatggatacaatcttcgtgaagatactcaattcctttt 9106469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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