View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_low_13 (Length: 237)
Name: NF3993_low_13
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 5445778 - 5445559
Alignment:
| Q |
18 |
attccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtcca |
117 |
Q |
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| T |
5445778 |
attccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtcca |
5445679 |
T |
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| Q |
118 |
aaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttgtagcttgtctctgtgagtt |
217 |
Q |
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| T |
5445678 |
aaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcatttgtagcttgtctctgtgagtt |
5445579 |
T |
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| Q |
218 |
gttgaagtaggcaggaacag |
237 |
Q |
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| T |
5445578 |
gttgaagtaggcaggaacag |
5445559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 5432586 - 5432671
Alignment:
| Q |
62 |
accaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggct |
147 |
Q |
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| T |
5432586 |
accaagatcgaacacaagtacattcgtctcaccttctctccacattttcctatccaaagtattagcaataacagctacagtaggct |
5432671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 5440919 - 5440996
Alignment:
| Q |
36 |
actaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttg |
113 |
Q |
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| T |
5440919 |
actaaggaaacatcaaaagttccaccaccaaggtcgaacacgggtgcatttttctcaccttctctctacattttcttg |
5440996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 54396588 - 54396721
Alignment:
| Q |
42 |
gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag |
141 |
Q |
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| T |
54396588 |
gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag |
54396687 |
T |
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| Q |
142 |
taggctcgttgatgatcctcatcacattaaaacc |
175 |
Q |
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| T |
54396688 |
taggctcattaataatcctcaacacattcaaacc |
54396721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 39985876 - 39985950
Alignment:
| Q |
107 |
tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaat |
181 |
Q |
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| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaat |
39985950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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