View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_low_15 (Length: 224)
Name: NF3993_low_15
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 40334115 - 40333914
Alignment:
| Q |
1 |
acaaacaagtttgaatccccacaagtagttgagagtccattttcaaatgaaaaagaaataaagatcattttctttctaaggaggatctttataaatatat |
100 |
Q |
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| T |
40334115 |
acaaacaagtttgaatccccacaagtagttgagagtccattttcaaatgaaaaagaaataaagatcattttctttctaaggaggatctttataaatatat |
40334016 |
T |
|
| Q |
101 |
gaggatccaaactcatctcataattgtctaacaaattgtctattcaaacatgcacttattatatttagaaatttgaaaatcactacaaatcatcctcatg |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40334015 |
gaggatccaaactcatctcacaattatctaacaaatcgtctattcaaacatgcacttattatatttagaaatttgaaaatcactacaaatcatcctcatg |
40333916 |
T |
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| Q |
201 |
ca |
202 |
Q |
| |
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|| |
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| T |
40333915 |
ca |
40333914 |
T |
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