View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3993_low_2 (Length: 451)

Name: NF3993_low_2
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3993_low_2
NF3993_low_2
[»] chr4 (12 HSPs)
chr4 (11-261)||(33506151-33506401)
chr4 (339-435)||(33506475-33506571)
chr4 (11-97)||(29348353-29348439)
chr4 (14-83)||(35833408-35833477)
chr4 (36-107)||(2116088-2116159)
chr4 (11-55)||(29348471-29348515)
chr4 (36-107)||(12682772-12682843)
chr4 (35-109)||(39406247-39406321)
chr4 (35-104)||(13171627-13171696)
chr4 (35-100)||(16895991-16896056)
chr4 (35-107)||(3757725-3757797)
chr4 (35-107)||(51347487-51347559)
[»] chr5 (7 HSPs)
chr5 (11-101)||(43352925-43353015)
chr5 (26-109)||(22693715-22693798)
chr5 (35-110)||(17643401-17643476)
chr5 (32-75)||(3214680-3214723)
chr5 (26-101)||(12422351-12422426)
chr5 (26-107)||(30140501-30140582)
chr5 (35-107)||(36886984-36887056)
[»] chr1 (9 HSPs)
chr1 (11-106)||(41918897-41918992)
chr1 (31-104)||(43116050-43116123)
chr1 (34-75)||(12712347-12712388)
chr1 (35-107)||(38894754-38894826)
chr1 (37-108)||(19322362-19322433)
chr1 (26-113)||(47134697-47134784)
chr1 (34-111)||(18107615-18107692)
chr1 (35-104)||(19400733-19400802)
chr1 (36-100)||(5426222-5426286)
[»] chr3 (12 HSPs)
chr3 (11-106)||(5237939-5238035)
chr3 (36-101)||(53800504-53800569)
chr3 (164-211)||(8574876-8574923)
chr3 (36-108)||(8393561-8393633)
chr3 (35-90)||(8016215-8016270)
chr3 (57-108)||(11602202-11602253)
chr3 (36-107)||(26777867-26777938)
chr3 (33-75)||(12177004-12177046)
chr3 (26-104)||(28981824-28981902)
chr3 (33-75)||(35433077-35433119)
chr3 (33-75)||(54797516-54797558)
chr3 (35-112)||(26102166-26102243)
[»] chr7 (8 HSPs)
chr7 (11-107)||(46197415-46197512)
chr7 (21-106)||(17814592-17814678)
chr7 (11-100)||(19052295-19052385)
chr7 (36-107)||(4848347-4848418)
chr7 (36-107)||(49146139-49146211)
chr7 (36-107)||(688062-688133)
chr7 (34-75)||(21893279-21893320)
chr7 (33-73)||(22992346-22992386)
[»] chr6 (10 HSPs)
chr6 (42-104)||(24939845-24939907)
chr6 (24-100)||(34316957-34317033)
chr6 (36-107)||(4107953-4108024)
chr6 (36-107)||(6969312-6969383)
chr6 (32-106)||(11267707-11267781)
chr6 (36-110)||(15045563-15045637)
chr6 (33-73)||(3092269-3092309)
chr6 (32-104)||(11519902-11519974)
chr6 (26-106)||(25529241-25529321)
chr6 (36-108)||(28573845-28573917)
[»] chr8 (9 HSPs)
chr8 (165-212)||(32781540-32781587)
chr8 (164-211)||(1142680-1142727)
chr8 (36-107)||(4466437-4466508)
chr8 (32-75)||(41901643-41901686)
chr8 (36-101)||(25616515-25616580)
chr8 (36-106)||(25620731-25620801)
chr8 (36-101)||(7389203-7389268)
chr8 (35-104)||(45434992-45435061)
chr8 (35-107)||(36776403-36776475)
[»] scaffold0051 (2 HSPs)
scaffold0051 (36-109)||(62059-62132)
scaffold0051 (33-75)||(53387-53429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-108)||(225433-225515)
[»] chr2 (8 HSPs)
chr2 (33-75)||(14749131-14749173)
chr2 (36-110)||(28607217-28607291)
chr2 (35-107)||(32677199-32677271)
chr2 (32-114)||(7359011-7359093)
chr2 (35-112)||(17836961-17837038)
chr2 (33-73)||(10823761-10823801)
chr2 (32-100)||(19488454-19488522)
chr2 (58-110)||(24520862-24520914)
[»] scaffold0045 (1 HSPs)
scaffold0045 (47-104)||(18896-18953)
[»] scaffold0057 (1 HSPs)
scaffold0057 (36-109)||(20596-20669)
[»] scaffold0006 (1 HSPs)
scaffold0006 (34-75)||(157961-158002)
[»] scaffold0429 (1 HSPs)
scaffold0429 (24-108)||(12959-13042)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 33506151 - 33506401
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatata 110  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  33506151 cataggccactagtgaattagtgaattatcaaattacccctcctaaggacaaaattagaaattcaatggacatgtatttttatattagtgtatagatata 33506250  T
Q  111 taacatgtttgaatgtttagtatttagctttgtgatttgaaaacaggacaagttgttatgttgactttatcaaccttcctcataaattctttcaataata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||| ||| |||| ||    
T  33506251 taacatgtttgaatgtttagtatttagctttgtgatttgaaaactggacaggttgttatgttgactttattaacctttctcataaatttttttaatatta 33506350  T
Q  211 ttatagtatatttattccgtcccaaattataaatcaccttaacaattctac 261  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  33506351 ttatagtatatttcttccgtctcaaattataaatcaccttaacaattctac 33506401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 33506475 - 33506571
Alignment:
Q  339 ttgttaatgacattaagaaggtataattcatagaatcgaaagaatagtgggtaatacaattgttaaatctatttttaaaatgaatttgggttaacta 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33506475 ttgttaatgacattaagaaagtataattcatagaatcgaaagaatagtgggtaatacaattgttaaatctatttttaaaatgaatttgggttaacta 33506571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 29348353 - 29348439
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatatta 97  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  29348353 cataggccactggtgaattagtgaattatcaaattgcccctcctaaatgcaaaattggaaattcaatggacatgcatttttatatta 29348439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 35833408 - 35833477
Alignment:
Q  14 aggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacat 83  Q
    |||||| ||||||||||||||||||||||||| |||||| || ||||||||| | ||| |||||||||||    
T  35833408 aggccactggtgaattagtgaattaccaaattgcccctcataggggcaaaatggtaaaatcaatggacat 35833477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 2116159 - 2116088
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||||||||| |||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  2116159 ttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 2116088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 29348471 - 29348515
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctccta 55  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  29348471 cataggccactggtgaattagtgaattaccaaattgcccctccta 29348515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 12682772 - 12682843
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||| || ||||||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  12682772 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 12682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 39406247 - 39406321
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatat 109  Q
    |||||||||||||||||  || |||| |||| | |||||||| | |||| | ||||||||| |||||||||||||    
T  39406247 attaccaaattaccccttataggggctaaatggtaaattcaaggaacatttctttttatataagtatatagatat 39406321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 13171696 - 13171627
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| ||||||  ||||||||||||    
T  13171696 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatata 13171627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 16896056 - 16895991
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagta 100  Q
    ||||||||||  |||||  |||||||||||||| |||||||| ||||||| |||||  ||||||||    
T  16896056 attaccaaatagccccttataagggcaaaattgtaaattcaagggacatggattttcttattagta 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 3757797 - 3757725
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | |||||||||| |||| | ||||  |||||||||||||||    
T  3757797 attaccaaattgccccttataggggcaaaatggtaaattcaatgaacatttcttttcttattagtatatagat 3757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 51347559 - 51347487
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| | ||||  |||||||||||||||    
T  51347559 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 51347487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 43353015 - 43352925
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtat 101  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  43353015 cataggccactggtgaattagtgatttaccaaattgcccctcctataggcaaaattggaaattcaatggacatgtatttttatattagtat 43352925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 22693798 - 22693715
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatat 109  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  22693798 aattagtaaattatcaaaatacccctcctgagggcaaaattggaaaatcaatagacatctatttttatattagtatatagatat 22693715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 17643401 - 17643476
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatata 110  Q
    ||||||||||| |||||  ||||||||||||   |||||||| |||||| ||||||  ||||||||||||||||||    
T  17643401 attaccaaattgccccttataagggcaaaatgataaattcaagggacatttattttcttattagtatatagatata 17643476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 3214680 - 3214723
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    |||||||||||||||||| | | |||||||||||||||||||||    
T  3214680 tgaattaccaaattaccctttcaaagggcaaaattggaaattca 3214723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 12422351 - 12422426
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtat 101  Q
    |||||||  ||||||||||| |||||  || ||||||||| | ||| |||| ||||||| ||||||||||||||||    
T  12422351 aattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatgaatttttatattagtat 12422426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 30140582 - 30140501
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||| | |||||||||||||| |  || ||||||||| | |||||||| |||||| | |||| |||| |||||||||||    
T  30140582 aattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 30140501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 36886984 - 36887056
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| | ||||  |||||||||||||||    
T  36886984 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36887056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 41918897 - 41918992
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    ||||||||| |||||||||| ||||| |||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41918897 cataggccactggtgaattaatgaatcaccaaattgccactcctaggggcaaaattggaaattcaatggacatatatttttatattagtatataga 41918992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 43116123 - 43116050
Alignment:
Q  31 gtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43116123 gtgaattaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtatata 43116050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 12712388 - 12712347
Alignment:
Q  34 aattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  12712388 aattaccaaattgcccctcctaggggcaaaattggaaattca 12712347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 38894826 - 38894754
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | ||||||||||||||| || |||  |||||||||||||||    
T  38894826 attaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtatatagat 38894754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 19322362 - 19322433
Alignment:
Q  37 taccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    ||||||||| |||||  || ||||||||| | |||||||| |||||| ||||||  ||||||||||||||||    
T  19322362 taccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatatagata 19322433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 47134784 - 47134697
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatatataa 113  Q
    ||||||| | |||||||||| |||||  || ||||||||| | |||||||||||||||    |||||||| |||||||||||| ||||    
T  47134784 aattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtatatagatagataa 47134697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 18107692 - 18107615
Alignment:
Q  34 aattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatatat 111  Q
    |||||| ||| ||||||||||||||||||||| ||||||| |  || |||  | ||| ||| ||||||||||||||||    
T  18107692 aattacaaaaatacccctcctaagggcaaaatgggaaatttatagggcatcaactttaatagtagtatatagatatat 18107615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 19400802 - 19400733
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    |||||| ||||||||||  || ||||||||| | |||||||| ||||||| |||||  ||||||||||||    
T  19400802 attaccgaattaccccttatatgggcaaaatggtaaattcaagggacatggattttcttattagtatata 19400733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 5426286 - 5426222
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagta 100  Q
    |||||||||| ||||| ||||||||||||| | ||| |||||||||||  | | |||||||||||    
T  5426286 ttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacattaactgttatattagta 5426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 5238035 - 5237939
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaaggg-caaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    ||||||| ||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||| |||||||||||    
T  5238035 cataggctattggtgaatttgtgaattaccaaattacccctcatatggggcaaaattggaaattcaatggacatctctttttatagtagtatataga 5237939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 53800569 - 53800504
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtat 101  Q
    |||||||||| ||||||||||||||||||| | ||| |||||||||||  | ||||||||||||||    
T  53800569 ttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 53800504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 8574876 - 8574923
Alignment:
Q  164 tgttatgttgactttatcaaccttcctcataaattctttcaataatat 211  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||    
T  8574876 tgttatgttacctttatcaaccttcctcacaaattctttcaataatat 8574923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8393633 - 8393561
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    |||||||||| |||||  || ||||||||| | |||||||| ||||||  | |||||||||||||||||||||    
T  8393633 ttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagata 8393561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 8016270 - 8016215
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttt 90  Q
    ||||||||||| ||||||||||||||| ||||||| |||||   ||||||||||||    
T  8016270 attaccaaattgcccctcctaagggcataattggagattcatatgacatgtatttt 8016215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 11602202 - 11602253
Alignment:
Q  57 gggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    ||||||||| | ||| |||| ||||||| |||||||||||||||||||||||    
T  11602202 gggcaaaatggtaaaatcaacggacatggatttttatattagtatatagata 11602253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 26777867 - 26777938
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||| || ||||||||| | ||| ||||||||| |  | ||||||||||||||||||||    
T  26777867 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtatatagat 26777938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 12177004 - 12177046
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||| ||||||||| | |||||||||||||||||    
T  12177004 gaattaccaaattgcccctcctaggagcaaaattggaaattca 12177046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 28981824 - 28981902
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    |||||||  ||||||||||| |||||  || ||||||||| | |||||||| ||||||| |||||  ||||||||||||    
T  28981824 aattagttgattaccaaattgccccttataggggcaaaatggtaaattcaagggacatggattttcttattagtatata 28981902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 35433119 - 35433077
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  35433119 gaattaccaaattgccccacctaagggtaaaattggaaattca 35433077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 54797516 - 54797558
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||| || ||||||| ||||||||||||||||||    
T  54797516 gaattaccaaattgcctctcctaaaggcaaaattggaaattca 54797558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 26102166 - 26102243
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatatata 112  Q
    |||||||||||||| ||  || ||||||||| | |||||||| |||||| | ||||  |||||||||||| |||||||    
T  26102166 attaccaaattacctcttataggggcaaaatggtaaattcaaaggacatttcttttcttattagtatatatatatata 26102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 46197512 - 46197415
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttata-ttagtatatagat 107  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||||||||||| | ||| |||||||||||  | ||||||| |||||||||||||    
T  46197512 cataggccaatggtgaattagtgaattaccaaattgcctctcctaagggcaaaatggtaaaatcaatggacattaacttttatatttagtatatagat 46197415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 17814678 - 17814592
Alignment:
Q  21 tggtgaattagtgaattaccaaattacccctcctaaggg-caaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    ||||||||| ||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||| | |||||||| |||||||||||    
T  17814678 tggtgaatttgtgaattaccaaattgcccttcctatggggcaaaattggaaattcaatggacatctctttttatagtagtatataga 17814592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 19052295 - 19052385
Alignment:
Q  11 cataggccattggtgaattagtgaattaccaaattacccctcctaaggg-caaaattggaaattcaatggacatgtatttttatattagta 100  Q
    ||||||| | |||||||||  |||||||||||||| |||||| || ||| |||||||||||||||||||||||| | |||||||| |||||    
T  19052295 cataggctactggtgaatttatgaattaccaaattgcccctcatatggggcaaaattggaaattcaatggacatctctttttatagtagta 19052385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 4848418 - 4848347
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||||||||| || ||||||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  4848418 ttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4848347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 49146139 - 49146211
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgta-tttttatattagtatatagat 107  Q
    |||||||||| |||||| || ||||||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  49146139 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtatatagat 49146211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 688133 - 688062
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||  || ||||||||| | |||||||| ||||||  | ||||||||||||||||||||    
T  688133 ttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagat 688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 21893320 - 21893279
Alignment:
Q  34 aattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    |||||||||||| ||||||||| |||||||| ||||||||||    
T  21893320 aattaccaaattgcccctcctaggggcaaaaatggaaattca 21893279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 22992386 - 22992346
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaatt 73  Q
    ||||||| ||||||||||| ||||||||||||||| |||||    
T  22992386 gaattactaaattaccccttctaagggcaaaattgtaaatt 22992346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 24939845 - 24939907
Alignment:
Q  42 aattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    |||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  24939845 aattgcccctcctagggccaaaattgaaaattcaatggacatgtatttttatattagtatata 24939907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 34317033 - 34316957
Alignment:
Q  24 tgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagta 100  Q
    ||||||||| |||||||||||| |||||| || ||||||||  | ||| |||||||||||   ||||||||||||||    
T  34317033 tgaattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta 34316957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 4108024 - 4107953
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||| || ||| ||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  4108024 ttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4107953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 6969312 - 6969383
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| |||||  || ||||||||| | |||||||| ||||||  | ||||||||||||||||||||    
T  6969312 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtatatagat 6969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 11267781 - 11267707
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    |||||||||||||| |||||| | ||||||||| ||| ||||||  ||||||  |||||  ||||||||||||||    
T  11267781 tgaattaccaaattgcccctcttgagggcaaaaatggtaattcataggacattaattttcttattagtatataga 11267707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 15045563 - 15045637
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatata 110  Q
    |||||||||||||| |  || ||||||||| | |||||||| |||||| | |||| |||| ||||||||||||||    
T  15045563 ttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagatata 15045637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 3092269 - 3092309
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaatt 73  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  3092269 gaattaccaaattgcccctcctatgggcaaaattgaaaatt 3092309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 11519902 - 11519974
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    |||||||||||||| |||||| | ||||||||| ||| ||||||  ||||||  |||||  ||||||||||||    
T  11519902 tgaattaccaaattgcccctcttgagggcaaaaatggtaattcataggacattaattttcttattagtatata 11519974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 25529321 - 25529241
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    |||||||  ||||||||||| |||||  || | ||||||| | |||  ||| ||||||| |||||||||||||||||||||    
T  25529321 aattagtagattaccaaattgccccttataggagcaaaatcgtaaaagcaacggacatggatttttatattagtatataga 25529241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 28573845 - 28573917
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    |||||||||| ||||||||| ||||||||| | ||| |||| ||| ||  | |||||||| ||||||||||||    
T  28573845 ttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtatatagata 28573917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 32781540 - 32781587
Alignment:
Q  165 gttatgttgactttatcaaccttcctcataaattctttcaataatatt 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  32781540 gttatgttgactttatcaaccttcctcacaaattctttcaataatatt 32781587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 1142680 - 1142727
Alignment:
Q  164 tgttatgttgactttatcaaccttcctcataaattctttcaataatat 211  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  1142680 tgttatgttgactttaccaaccttcctcacaaattctttcaataatat 1142727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 4466437 - 4466508
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    |||||||||| ||||||||||||| ||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  4466437 ttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4466508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 41901686 - 41901643
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  41901686 tgaattaccaaattatccctcctaagggcaaaattagaaattca 41901643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 25616515 - 25616580
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtat 101  Q
    |||||||||| |||||| |||||||||||| | ||| |||||||||||  | ||||||||||||||    
T  25616515 ttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 25616580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 25620731 - 25620801
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatataga 106  Q
    |||||||||| |||||| || ||||||||| | ||| |||||||||||| | |||||||| ||| ||||||    
T  25620731 ttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatgaacttttatatcagtgtataga 25620801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 7389268 - 7389203
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtat 101  Q
    |||||||||| ||||||||  ||||||||| | ||| |||||||||||  | ||||||||||||||    
T  7389268 ttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtat 7389203  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 45435061 - 45434992
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    ||||||||||| |||||  |||||||||||| | ||||||||  |||||| |||||  ||||||||||||    
T  45435061 attaccaaattgccccttataagggcaaaatggtaaattcaagtgacatggattttcttattagtatata 45434992  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 36776475 - 36776403
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| | ||||  |||||||||||||||    
T  36776475 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36776403  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 62132 - 62059
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatat 109  Q
    |||||||||| |||||| || ||||||||| | ||| |||||||||||  | ||||||||||||||||||||||    
T  62132 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagatat 62059  T

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Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 53429 - 53387
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||    
T  53429 gaattaccaaattgccccttctaggggcaaaattggaaattca 53387  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 225515 - 225433
Alignment:
Q  26 aattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    ||||||| | |||||||||| |||||  || ||||||||| | ||||||||||||||| | |||| |||| ||||||||||||    
T  225515 aattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatataagtatatagata 225433  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 14749173 - 14749131
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  14749173 gaattaccaaattgctcctcctaagggcaaaattggaaattca 14749131  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 28607291 - 28607217
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatata 110  Q
    |||||||||| |||||  || || |||||| | ||||||||||||||| |||||| |||| ||||||||||||||    
T  28607291 ttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatatagatata 28607217  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 32677199 - 32677271
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagat 107  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| |||||| |||| |||||||||||    
T  32677199 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttaatataagtatatagat 32677271  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 7359093 - 7359011
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatatataac 114  Q
    |||||||||||||| |||||| | ||||||||| ||| ||||||  ||||||  |||||  |||||||||||| ||| |||||    
T  7359093 tgaattaccaaattgcccctcttgagggcaaaaatggtaattcataggacattaattttcttattagtatatatatagataac 7359011  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 17837038 - 17836961
Alignment:
Q  35 attaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatatata 112  Q
    ||||||||||| |||||  || ||||||||| | |||||||| |||||| | |||| |||| |||||||| |||||||    
T  17837038 attaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatatatatata 17836961  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 10823761 - 10823801
Alignment:
Q  33 gaattaccaaattacccctcctaagggcaaaattggaaatt 73  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  10823761 gaattaccaaattgccccttctaagggcaaaattgtaaatt 10823801  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 19488522 - 19488454
Alignment:
Q  32 tgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagta 100  Q
    ||||| ||||||||||||||| | | ||||||| ||| ||||||  ||||||  |||||||||||||||    
T  19488522 tgaatcaccaaattacccctcttgaaggcaaaaatggtaattcataggacattaatttttatattagta 19488454  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 24520914 - 24520862
Alignment:
Q  58 ggcaaaattggaaattcaatggacatgtatttttatattagtatatagatata 110  Q
    |||||||||  |||||||| |||||| | ||||||||| ||||||||||||||    
T  24520914 ggcaaaattataaattcaagggacatttctttttatataagtatatagatata 24520862  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 18896 - 18953
Alignment:
Q  47 cccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatata 104  Q
    ||||||||| |||||||||   ||| |||||||||||||||||||||| |||||||||    
T  18896 cccctcctaggggcaaaatgataaaatcaatggacatgtatttttataatagtatata 18953  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 20596 - 20669
Alignment:
Q  36 ttaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagatat 109  Q
    |||||||||| |||||  || ||||||||| | |||||||| |||||| | |||| |||| |||||||||||||    
T  20596 ttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagatat 20669  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 157961 - 158002
Alignment:
Q  34 aattaccaaattacccctcctaagggcaaaattggaaattca 75  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  157961 aattatcaaattgcccctcctaagagcaaaattggaaattca 158002  T

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Target: scaffold0429 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 13042 - 12959
Alignment:
Q  24 tgaattagtgaattaccaaattacccctcctaagggcaaaattggaaattcaatggacatgtatttttatattagtatatagata 108  Q
    ||||||||| |||||||||||| |||||| || ||||||||  | ||| ||||| |||||   ||| ||||||||||||||||||    
T  13042 tgaattagtaaattaccaaattgcccctcttaggggcaaaa-ggtaaaatcaattgacatcactttctatattagtatatagata 12959  T

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