View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3993_low_5 (Length: 315)
Name: NF3993_low_5
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 3659852 - 3660139
Alignment:
| Q |
10 |
attatactatatgaaaaaacaacaatataatatatcaatcattagatgagacaaagtaaataaaaacaaacgatatattttcatactctagaagttagcg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
3659852 |
attatactatatgaaaaaacaacaatataatatatcaatcattagatgagacaaagtaaataaaaaaaaacgttatattttcatactctagaagttagcg |
3659951 |
T |
|
| Q |
110 |
acatttctcaattggtaaacaacaatgctaataaaatttaactttcaacaatatatacttcttttgtgcgtagttattttttgtttattcttatgtgctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3659952 |
acatttctcaattggtaaacaacaatgctaataaaatttaactttcaacaatatatactttttttgtgcgtagttattttttgtttattcttatgtactt |
3660051 |
T |
|
| Q |
210 |
agttatttcagtcatagaacaaatataatttgttatgaaattcagttgtttaaattttgtggaaattaaattacatataggcagttgt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3660052 |
agttatttcagtcatagaacaaatataatttgttatgaaattcagttgtttaaattttgtggaaattaaattacatataggcagttgt |
3660139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University