View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3993_low_7 (Length: 296)
Name: NF3993_low_7
Description: NF3993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3993_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18813286 - 18813430
Alignment:
| Q |
1 |
gtttaggaactaaattgatgatttattcttcatctcatcgtttgagctaattttggacatatatattaaacaatttgtttgtgatttattaataggtttt |
100 |
Q |
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| T |
18813286 |
gtttagggactaaattgatgatttattcttcatctcatcctttgagctaattttggacatatatattaaacaatttgtttgtgatttattaataggtttt |
18813385 |
T |
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| Q |
101 |
gggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
145 |
Q |
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| T |
18813386 |
gggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
18813430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 18813951 - 18814054
Alignment:
| Q |
141 |
gaactgattaacctaaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttcttttctctaagtaacttgcatgaatt |
240 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18813951 |
gaactgattaacctgaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttcttttctctaagtaacttgcgtgaatt |
18814050 |
T |
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| Q |
241 |
tgtt |
244 |
Q |
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|||| |
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| T |
18814051 |
tgtt |
18814054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 48249656 - 48249511
Alignment:
| Q |
1 |
gtttaggaactaaattgatgatttattcttca-tctcatcgtttgagctaattttggacatatatattaaacaatttgtttgtgattt-attaataggtt |
98 |
Q |
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| T |
48249656 |
gtttagggactaaattgatgatttattctttaatctcaccctttgagctaattttggacatatatattaa-caatttgtttgtgattttattaataggtt |
48249558 |
T |
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| Q |
99 |
ttgggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
145 |
Q |
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| T |
48249557 |
ttgggaaacaacataaagaaggagttgtcaagaatccagacagaact |
48249511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 48248971 - 48248834
Alignment:
| Q |
141 |
gaactgattaacctaaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttcttttctctaagtaacttgcatgaatt |
240 |
Q |
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||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||| |||||||||| |
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| T |
48248971 |
gaactgattaagctgaggtccatatcagcttcttcctctaagaaactaattaagctgaggtctctatcagcttc-tttctccaagtaacatgcatgaatt |
48248873 |
T |
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| Q |
241 |
tgttcatacaagcaaatgttagttgtaccggagtatattg |
280 |
Q |
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| T |
48248872 |
tgttcatacaagcaaatgtta-ttgtactagagtatattg |
48248834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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