View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3994_high_15 (Length: 252)
Name: NF3994_high_15
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 27956597 - 27956436
Alignment:
| Q |
87 |
tcgtgactactctaaaacacttttcatgaatttgaagaaatctttcacacttaatagtattattga------------tataagaaaataatgacaaaca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27956597 |
tcgtgactactctaaaacacttttcatgaatttgaagaaatctttcacacttaatagtattattgacataagaattgttataagaaaataatgacaaaca |
27956498 |
T |
|
| Q |
175 |
atgtattgaaccatcatatttatatcgtatcatatacaatttcaagtttataactatgaatc |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27956497 |
atgtattgaagcatcatatttatatcgtatcatatacaatttcaagtttataactatgaatc |
27956436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 2488135 - 2488192
Alignment:
| Q |
6 |
tgcgattgacactgcatcagttacatttaactacaattctatgcaatattattaatta |
63 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||| |||||||| ||||||||| |||||| |
|
|
| T |
2488135 |
tgcgattgagactgcatcagtcgcatttgactgcaattctacgcaatattaataatta |
2488192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University