View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3994_high_17 (Length: 249)
Name: NF3994_high_17
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_17 |
 | |
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| [»] scaffold0076 (1 HSPs) |
| | |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 20134003 - 20133768
Alignment:
| Q |
5 |
agattggactttcatccttgattctattactactactac---agcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
20134003 |
agattggactttcatccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaac |
20133904 |
T |
|
| Q |
102 |
tcaatttctcacctacatcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaac--at |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20133903 |
tcaatttctcacctacatcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaacatat |
20133804 |
T |
|
| Q |
200 |
gtgtttctccgttttacgatacgagggttttaaatt |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20133803 |
gtgtttctccgttttacgataagagggttttaaatt |
20133768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 14674624 - 14674726
Alignment:
| Q |
38 |
tactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatcagtga |
137 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
14674624 |
tactacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttataagtga |
14674723 |
T |
|
| Q |
138 |
aat |
140 |
Q |
| |
|
||| |
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|
| T |
14674724 |
aat |
14674726 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 31710254 - 31710348
Alignment:
| Q |
38 |
tactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||| |
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|
| T |
31710254 |
tactacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatc |
31710348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 1865 - 1778
Alignment:
| Q |
146 |
gctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaacatgtgtttctccgttttacgatacgagggttttaaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
1865 |
gctttcgatttcactttatgaatttagttgcctttggttcgtgcagtagaaca--tatttctccgttttacgatacgagggttttaaatt |
1778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18974427 - 18974485
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
59 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18974427 |
caataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
18974485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 44358068 - 44358303
Alignment:
| Q |
5 |
agattggactttcatccttgattctattact---actactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
44358068 |
agattggactttcatccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaac |
44358167 |
T |
|
| Q |
102 |
tcaatttctcacctacatcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaac--at |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
44358168 |
tcaatttctcacctacatcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaacatat |
44358267 |
T |
|
| Q |
200 |
gtgtttctccgttttacgatacgagggttttaaatt |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44358268 |
gtgtttctccgttttacgataagagggttttaaatt |
44358303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5331445 - 5331387
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
59 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5331445 |
caataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
5331387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12325760 - 12325893
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325760 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaa |
12325859 |
T |
|
| Q |
101 |
ctcaatttctcacctacatcaacccggttatcag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12325860 |
ctcaatttctcacctacatcaacccggttatcag |
12325893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 47866 - 48005
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47866 |
caatagattggactttcatccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaa |
47965 |
T |
|
| Q |
101 |
ctcaatttctcacctacatcaacccggttatcagtgaaat |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47966 |
ctcaatttctcacctacatcaacccggttatcaatgaaat |
48005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 11203461 - 11203611
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
11203461 |
caatagattggactttcatccttgatttcattact---actacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaacaaatgaa |
11203557 |
T |
|
| Q |
101 |
ctcaatttctcacctacatcaacccggtt---atcagtgaaatgtatggctttc |
151 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11203558 |
ctcaacttctcccctacatcaacccggttatcatcagtgaaatgtatggctttc |
11203611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 4281634 - 4281540
Alignment:
| Q |
38 |
tactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
132 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
4281634 |
tactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc |
4281540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 17594762 - 17594851
Alignment:
| Q |
43 |
cagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
132 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
17594762 |
cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
17594851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19807258 - 19807200
Alignment:
| Q |
1 |
caatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
59 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19807258 |
caataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
19807200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 135297 - 135230
Alignment:
| Q |
170 |
tagttgcctttggttcgtgcggtagaacat--gtgtttctccgttttacgatacgagggttttaaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
135297 |
tagttgcctttggttcgtgcggtagaacatatgtgtttctccgttttacgatacgagggttttaaatt |
135230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 8165901 - 8165979
Alignment:
| Q |
54 |
ttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
132 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| | || ||||||||||||| |
|
|
| T |
8165901 |
ttgtatttcctaagtaattttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatc |
8165979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 383 - 329
Alignment:
| Q |
80 |
cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatcag |
134 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||| || ||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatcgtcctggttatcag |
329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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